PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP001205.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

MYB

Protein Properties

Length: 601aa MW: 66830.4 Da PI: 7.9497

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP001205.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	44.8	2.9e-14	26	73	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEd++l ++ G g+W+ +ar g+ R++k+c++rw +yl PCP001205.1 26 KGLWSPEEDDKLMRYMINNGQGCWSDVARNAGLQRCGKSCRLRWINYL 73 678*******************************************97 PP
2	Myb_DNA-binding	50.6	4.5e-16	79	122	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+++++E+el+++++ +lG++ W+ Ia+ ++ gRt++++k++w++ PCP001205.1 79 RGAFSPQEEELIIHLHSLLGNR-WSQIAAQLP-GRTDNEIKNFWNS 122 89******************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 601 aa Download sequence
MRKPEPSSAA AGKNNKENNS NSKVRKGLWS PEEDDKLMRY MINNGQGCWS DVARNAGLQR 60 CGKSCRLRWI NYLRPDLKRG AFSPQEEELI IHLHSLLGNR WSQIAAQLPG RTDNEIKNFW 120 NSTIKKRLKN LASSNGSPNT SDSSPEAKDH RVVAAGRFII PSQEHGMVSI YRDSTPSFMQ 180 SAVLSHMFDP FPVLDIDQGG LTLSGAGGYY NANPCITQRE IGVGGGGDCY DFGENGGFGS 240 GDVDIGVEGE IFVPPLESVS IEDQNIKTET TYGDSNNNNN NYYNNINSIL TCNKTNKNIK 300 GESIIGVGNY FDDDQEELTR GDWDLEDLMK DVSSSSFPFL DYQSLEFGPT PKTKPDLKKL 360 HVAIGILAEY HECPLLLANE SGRKRASVPA YESSVNKKPM NYSVAHRSSA TPKKLVINLS 420 SLNEKKQAAE LEPMKSATPK KAKYIAENIV DSAAKEIAKS IHSSVTQLNC LPRRRKLFPR 480 VVVPEEFSEI LLLFNVELLK DLSGYAKQSP YGRALGLNKK DSPFMNQETT ENSRSTPDLM 540 FEKKIVSQGQ MHRWKSGTLS KGTEGKEDDI WRTLISIVRL EATYPPSTVL LLLSCRSLTP 600 W

Sequence ? help Back to Top

Protein Sequence Length: 601 aa Download sequence

MRKPEPSSAA AGKNNKENNS NSKVRKGLWS PEEDDKLMRY MINNGQGCWS DVARNAGLQR  60
CGKSCRLRWI NYLRPDLKRG AFSPQEEELI IHLHSLLGNR WSQIAAQLPG RTDNEIKNFW  120
NSTIKKRLKN LASSNGSPNT SDSSPEAKDH RVVAAGRFII PSQEHGMVSI YRDSTPSFMQ  180
SAVLSHMFDP FPVLDIDQGG LTLSGAGGYY NANPCITQRE IGVGGGGDCY DFGENGGFGS  240
GDVDIGVEGE IFVPPLESVS IEDQNIKTET TYGDSNNNNN NYYNNINSIL TCNKTNKNIK  300
GESIIGVGNY FDDDQEELTR GDWDLEDLMK DVSSSSFPFL DYQSLEFGPT PKTKPDLKKL  360
HVAIGILAEY HECPLLLANE SGRKRASVPA YESSVNKKPM NYSVAHRSSA TPKKLVINLS  420
SLNEKKQAAE LEPMKSATPK KAKYIAENIV DSAAKEIAKS IHSSVTQLNC LPRRRKLFPR  480
VVVPEEFSEI LLLFNVELLK DLSGYAKQSP YGRALGLNKK DSPFMNQETT ENSRSTPDLM  540
FEKKIVSQGQ MHRWKSGTLS KGTEGKEDDI WRTLISIVRL EATYPPSTVL LLLSCRSLTP  600
W

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	472	476	PRRRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G12870.1	3e-57	MYB family protein