PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP001243.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

CAMTA

Protein Properties

Length: 856aa MW: 93743.9 Da PI: 4.5716

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP001243.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	157.4	2.9e-49	23	139	2	118
CG-1 2 lkekkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcy 99 k k+rwl+++ei+++L n + ++++e+++ p+sgs++++++k+ r+frkDGy+wkk kdgk v+E+he+LKvggv++l+cyYah+ee+++fqrrcy PCP001243.1 23 FKGKHRWLRPDEICELLRNPNGITISEEPTNMPSSGSILFFDKKVQRHFRKDGYKWKKAKDGKIVKEAHERLKVGGVDTLHCYYAHGEEDENFQRRCY 120 5679******************************************************************************************** PP CG-1 100 wlLeeelekivlvhylevk 118 w+Lee+l+++vlvhy++vk PCP001243.1 121 WMLEEKLSHMVLVHYRDVK 139 **************985 PP

Sequence ? help Back to Top
Protein Sequence Length: 856 aa Download sequence
MAERNHNHLD QLVLHLKASR ILFKGKHRWL RPDEICELLR NPNGITISEE PTNMPSSGSI 60 LFFDKKVQRH FRKDGYKWKK AKDGKIVKEA HERLKVGGVD TLHCYYAHGE EDENFQRRCY 120 WMLEEKLSHM VLVHYRDVKG DKIKVRYNKE TAEGVQRSCE TDEITPKSEI DSFASSSFNP 180 SNFQHSQATD GTPLNSAQTA QSKNTDSAYN HQASSGLPPV PELQHAVAEF NAGFLDTSYP 240 LTLTNCKERE VEEAVSSYFI PTNLQMRSQA IDTASLSSVY ASDFEDVQSA YSMADDFDWE 300 SFCNNVTTFA GTGTATPCLI QTEGAVSFLH ETEEIGPNFE MDNFVSPRYA DVPIQFGEKS 360 SNFGDDEAGC NYWGAGSSVA VEPSHASLGK RQRDSTASEE GASKATPHAT TEEVDKDEEE 420 EGKGINQVRK RTKVTCGQKS NSVAPSNDSE EATLAVGTAP PQVEEFNSAI QQGEVIAGNN 480 PAASDGVTND ATALSQAQQD DETTRSDVGS EGHPQASLGK SVDGGISEDE LSGESGSKAV 540 GGDVVYFDEV DSFLSDDGRA GVENVDVDVS NVVVVSCVHV EGTTTSVPPV SVDVAMAPIG 600 VQASIGVLSE PMTFPKETIR GDGVSLNGAQ TSEVVPPPVI LSPEEQASNE EWVSWHKAFN 660 TLKDSIRNGA RVLRSIEDLL PQGEAFTSHV DFRNTKVRSG LADILSRFLG RVGDADECLI 720 GLSPYMRGMV FEELGILLYD MEHTPRVEVS EHRLLCWRDM INDVAALGVP VSSLIESWER 780 SRDTMFGLHL EEDKGILDQF VKVNKLERVV ELQRKELEAE KLKLKKLVHG SSKEIAACLQ 840 LAADHLIAGT SGSFEG

Sequence ? help Back to Top

Protein Sequence Length: 856 aa Download sequence

MAERNHNHLD QLVLHLKASR ILFKGKHRWL RPDEICELLR NPNGITISEE PTNMPSSGSI  60
LFFDKKVQRH FRKDGYKWKK AKDGKIVKEA HERLKVGGVD TLHCYYAHGE EDENFQRRCY  120
WMLEEKLSHM VLVHYRDVKG DKIKVRYNKE TAEGVQRSCE TDEITPKSEI DSFASSSFNP  180
SNFQHSQATD GTPLNSAQTA QSKNTDSAYN HQASSGLPPV PELQHAVAEF NAGFLDTSYP  240
LTLTNCKERE VEEAVSSYFI PTNLQMRSQA IDTASLSSVY ASDFEDVQSA YSMADDFDWE  300
SFCNNVTTFA GTGTATPCLI QTEGAVSFLH ETEEIGPNFE MDNFVSPRYA DVPIQFGEKS  360
SNFGDDEAGC NYWGAGSSVA VEPSHASLGK RQRDSTASEE GASKATPHAT TEEVDKDEEE  420
EGKGINQVRK RTKVTCGQKS NSVAPSNDSE EATLAVGTAP PQVEEFNSAI QQGEVIAGNN  480
PAASDGVTND ATALSQAQQD DETTRSDVGS EGHPQASLGK SVDGGISEDE LSGESGSKAV  540
GGDVVYFDEV DSFLSDDGRA GVENVDVDVS NVVVVSCVHV EGTTTSVPPV SVDVAMAPIG  600
VQASIGVLSE PMTFPKETIR GDGVSLNGAQ TSEVVPPPVI LSPEEQASNE EWVSWHKAFN  660
TLKDSIRNGA RVLRSIEDLL PQGEAFTSHV DFRNTKVRSG LADILSRFLG RVGDADECLI  720
GLSPYMRGMV FEELGILLYD MEHTPRVEVS EHRLLCWRDM INDVAALGVP VSSLIESWER  780
SRDTMFGLHL EEDKGILDQF VKVNKLERVV ELQRKELEAE KLKLKKLVHG SSKEIAACLQ  840
LAADHLIAGT SGSFEG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22300.2	4e-59	CAMTA family protein