PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP001356.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

MYB_related

Protein Properties

Length: 617aa MW: 68894.2 Da PI: 8.1414

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP001356.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	26.7	1.3e-08	378	400	23	46
-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqk 46 W++Ia++++ gRt++++k++w++ PCP001356.1 378 IWSLIAARLP-GRTDNDVKNHWNT 400 5*******.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 617 aa Download sequence
MYLKKQSRRP AVKALRAVLS SASAQREYLW LKRPAYFRSG SSGFWRIVLK TTIPIQISAR 60 EGIGEEKTSF FVGVHPICHD GLKEVKVFNR VLPSSVELAI QRSNCYHKEG HEASCEYGTS 120 LYMLLFGLVQ IVMSQIPDFH NMEWLSVIAA IMSFTYSFIG LGLGFAKVIE NGKIQGSLTG 180 VPTSNVADKL WLAFQALGDI AFAYPYSIIV LEIQDTLKSP PPENQTMKKA SKIAIFVTTF 240 FYLCCGCFGY AAFGDDTPGN LLTGFGFYEP YWLIDFANAC IVLHLVGGYQ IFSQPVFAVA 300 ERWSRKKYPS SGFVNNFYSI KVPLLPRFQV NPFRLCFRTV YVVSTTAIAM IFPYFNQVLG 360 VLGALNFWPL AIYFPVEIWS LIAARLPGRT DNDVKNHWNT KLKKKLSGMG IDPVTHKPFS 420 HLMAEIATTL EQPQAAHLAE SALGFFKDEM LHLLTKKRMD FQLQHINPTP GNSTATYINR 480 KQEEKDGTIE KIKIGLSRAM QEQPDMLNSN KLWTDTTGAT SVNITGNYSP FPLPMSGFQY 540 GHSTFGNEGN GSLWSQSLCT GSTAADQLGQ LHDKLEVEEN GEESTGGKEL RNGSSNIFNS 600 DGLLWDLPSD DLMNQMV

Sequence ? help Back to Top

Protein Sequence Length: 617 aa Download sequence

MYLKKQSRRP AVKALRAVLS SASAQREYLW LKRPAYFRSG SSGFWRIVLK TTIPIQISAR  60
EGIGEEKTSF FVGVHPICHD GLKEVKVFNR VLPSSVELAI QRSNCYHKEG HEASCEYGTS  120
LYMLLFGLVQ IVMSQIPDFH NMEWLSVIAA IMSFTYSFIG LGLGFAKVIE NGKIQGSLTG  180
VPTSNVADKL WLAFQALGDI AFAYPYSIIV LEIQDTLKSP PPENQTMKKA SKIAIFVTTF  240
FYLCCGCFGY AAFGDDTPGN LLTGFGFYEP YWLIDFANAC IVLHLVGGYQ IFSQPVFAVA  300
ERWSRKKYPS SGFVNNFYSI KVPLLPRFQV NPFRLCFRTV YVVSTTAIAM IFPYFNQVLG  360
VLGALNFWPL AIYFPVEIWS LIAARLPGRT DNDVKNHWNT KLKKKLSGMG IDPVTHKPFS  420
HLMAEIATTL EQPQAAHLAE SALGFFKDEM LHLLTKKRMD FQLQHINPTP GNSTATYINR  480
KQEEKDGTIE KIKIGLSRAM QEQPDMLNSN KLWTDTTGAT SVNITGNYSP FPLPMSGFQY  540
GHSTFGNEGN GSLWSQSLCT GSTAADQLGQ LHDKLEVEEN GEESTGGKEL RNGSSNIFNS  600
DGLLWDLPSD DLMNQMV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56110.1	7e-43	MYB family protein