PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP001420.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

NF-YB

Protein Properties

Length: 245aa MW: 26919.8 Da PI: 6.0308

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP001420.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	166.6	3.2e-52	56	150	1	95
NF-YB 1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyreleg 95 vreqdr++Pianv+rim+++lP +akis+daket+qecvse+i+f+t+ea+++cqre+rkt++++d+lwa+++lGf++yvepl++yl++yre e+ PCP001420.1 56 VREQDRYMPIANVIRIMRRILPPHAKISDDAKETMQECVSEYIAFITGEANERCQREQRKTVTAEDVLWAMGKLGFDNYVEPLTIYLQRYRESES 150 69******************************************************************************************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 245 aa Download sequence
MERMGGGLPS RHAKSWNPAN ANSSDGGNAI ANTSNPANSA GNSDNNTEQR APQCLVREQD 60 RYMPIANVIR IMRRILPPHA KISDDAKETM QECVSEYIAF ITGEANERCQ REQRKTVTAE 120 DVLWAMGKLG FDNYVEPLTI YLQRYRESES SDRSQFVKRE ERQPTDYCPP GHAVPQVAMM 180 SPPPPSYGPG YYFGPQHGPP MYDPSMMGMF RDGSSSGAGG GGSSSASGAQ GENSLGRFDP 240 FDHFK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G47670.2	6e-60	NF-YB family protein