PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP001437.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

MYB

Protein Properties

Length: 348aa MW: 39457.1 Da PI: 6.1869

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP001437.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	54.5	2.8e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg W++eEde+l+++++ +G g+W+ ++++ g+ R++k+c++rw +yl PCP001437.1 14 RGLWSPEEDEKLIRYITTHGYGCWSEVPEKAGLQRCGKSCRLRWINYL 61 788*******************************************97 PP
2	Myb_DNA-binding	53.1	7.6e-17	67	111	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rgr+T+eE++l++ ++ G++ W+ Ia++++ gRt++++k++w+++ PCP001437.1 67 RGRFTPEEEKLIISLHGVVGNR-WAHIASHLP-GRTDNEIKNYWNSW 111 89******************.*****.**********98 PP

Sequence ? help Back to Top
Protein Sequence Length: 348 aa Download sequence
MGHHSCCNQQ KVKRGLWSPE EDEKLIRYIT THGYGCWSEV PEKAGLQRCG KSCRLRWINY 60 LRPDIRRGRF TPEEEKLIIS LHGVVGNRWA HIASHLPGRT DNEIKNYWNS WIKKKIRKPS 120 TPSSASTISP PPSVDHQQHI ILHLGNYNNQ LDFAHQDLGT TLKPQAQETL FSSTCPMFMF 180 DTSTTANIEA APESYNARGE IFEDMIVATG LNSSEPWNLN QHQVQAFPPP ATMSFNTTNS 240 STNNVTMDTN YLPPLIENMD NMVPNVDHHH QSCHNIDEEG DHDQVALECL MQRHELNEWV 300 VSQQQCSNFL FWDNLVDDQA IVLVGQDHGI AHPASSNAVQ LSSFPPSL

Sequence ? help Back to Top

Protein Sequence Length: 348 aa Download sequence

MGHHSCCNQQ KVKRGLWSPE EDEKLIRYIT THGYGCWSEV PEKAGLQRCG KSCRLRWINY  60
LRPDIRRGRF TPEEEKLIIS LHGVVGNRWA HIASHLPGRT DNEIKNYWNS WIKKKIRKPS  120
TPSSASTISP PPSVDHQQHI ILHLGNYNNQ LDFAHQDLGT TLKPQAQETL FSSTCPMFMF  180
DTSTTANIEA APESYNARGE IFEDMIVATG LNSSEPWNLN QHQVQAFPPP ATMSFNTTNS  240
STNNVTMDTN YLPPLIENMD NMVPNVDHHH QSCHNIDEEG DHDQVALECL MQRHELNEWV  300
VSQQQCSNFL FWDNLVDDQA IVLVGQDHGI AHPASSNAVQ LSSFPPSL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G63910.1	9e-98	MYB family protein