PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP001553.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

Protein Properties

Length: 250aa MW: 27656.7 Da PI: 9.3903

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP001553.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	106.6	1.2e-33	2	102	1	99
EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 f+k ltpsdv+k++rlv+pk++ae++ gg+ ++ l++edesg+sW+++++y+++s++yvltkGW+++vk+++L++gD+v+F++ + ++ +l++ PCP001553.1 2 FEKPLTPSDVGKLNRLVIPKQHAEKYfplgGGD--SGLLLSFEDESGKSWRFRYSYWNSSQSYVLTKGWSRYVKEKRLDAGDVVLFERLRAHTDRLFI 97 99*************************7666..6679********************************************99888899* PP EEE-S CS B3 95 kvfrk 99 +++r+ PCP001553.1 98 GWRRR 102 ***98 PP

Sequence ? help Back to Top
Protein Sequence Length: 250 aa Download sequence
MFEKPLTPSD VGKLNRLVIP KQHAEKYFPL GGGDSGLLLS FEDESGKSWR FRYSYWNSSQ 60 SYVLTKGWSR YVKEKRLDAG DVVLFERLRA HTDRLFIGWR RRNAVPAHDS GAQVSRGGVE 120 SSSGGGGGWT RMLYSAPHHG SSYPAHQHHH SVAPYPPDCL HAAGSDVQNM NQTTSVGNSK 180 VLRLFGVNLE CQQQAAEHHE SEPSTPDGSS SSLSMSSQGP TYGQQQLYAP AAYNYADQHR 240 VRKPPKLSLS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06250.2	1e-56	B3 family protein