PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP001713.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family M-type_MADS
Protein Properties Length: 257aa    MW: 29314.4 Da    PI: 9.0298
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP001713.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF31.32.6e-101051344
                 --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
       SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                 +en++ r+  f kR++ +l K eE+ +LC++++  i++++++
  PCP001713.1 10 VENDRARKDCFRKRKANLLRKMEEITTLCQVNAFAIVYGQDN 51
                 69*************************************997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    
MGKKVKLAWV ENDRARKDCF RKRKANLLRK MEEITTLCQV NAFAIVYGQD NNDPTLWPTH  60
PEVEEQIKRF FSIPNVKRYK KSLNQETYLL ERAVKFRERI KKINKQIREM KVNKLMHQVH  120
EGKSLYEFER SDMTDLVSFC KEKMYGIKKL VAHLEKEDPN SEQGTSNYEK GKDIENTAGN  180
IAANGIENSG DALGLGLMSH SGTGKEVGQP DVSHEMVKQS EFVTGKKGKR IRLMGVAIEV  240
SSVADDDDAE DPLQHGN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40210.14e-28M-type_MADS family protein