PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP001807.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family MIKC_MADS
Protein Properties Length: 239aa    MW: 27984.8 Da    PI: 7.9117
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP001807.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF93.78.3e-30959151
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                 krienk+nrqvtfskR +g+lKKA+E+SvLCda+va+i+fs++gkl+ey++
  PCP001807.1  9 KRIENKINRQVTFSKRSTGLLKKAHEISVLCDAQVALIVFSNKGKLFEYAT 59
                 79***********************************************86 PP
2K-box99.74.3e-33811747100
        K-box   7 ksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                  ++ + + + +++ e+++Lk+++e Lqr++Rh+lGedL+sL+l+e+q+LeqqL+++ k+iR++Kn+l++e+i elqkkek++qe+n+ L kk++e
  PCP001807.1  81 VEPDFESQGNWTFEYSRLKAKVEVLQRNHRHYLGEDLDSLTLREIQSLEQQLDTAHKQIRQRKNQLMHESITELQKKEKAIQEQNNLLAKKIKE 174
                  5545566789*********************************************************************************987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    
MGRGRVQLKR IENKINRQVT FSKRSTGLLK KAHEISVLCD AQVALIVFSN KGKLFEYATD  60
SCMEQILERY ERYSYAERQL VEPDFESQGN WTFEYSRLKA KVEVLQRNHR HYLGEDLDSL  120
TLREIQSLEQ QLDTAHKQIR QRKNQLMHES ITELQKKEKA IQEQNNLLAK KIKEKEKAAA  180
QPEVQNWEQQ NHDLDLLPQP LPCLNIGGTQ QDEFLQARRN QLDLTLEPFY SCHLGCFAA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69120.11e-105MIKC_MADS family protein