PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP001808.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

MIKC_MADS

Protein Properties

Length: 235aa MW: 26537.2 Da PI: 8.4585

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP001808.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	98.8	2.2e-31	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fs++gklye++s PCP001808.1 9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIVFSTSGKLYEFCS 59 79***********************************************96 PP
2	K-box	96.1	5.4e-32	80	173	7	100
K-box 7 ksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 s+++++++s +qe+ +Lk ++e Lqr+qRh+lGedL L +keLqqLe+qL+ slkkiRs+K+++++ qi+elq ke++l e+n+ Lr+klee PCP001808.1 80 ASQSAEDEQSRYQEYLNLKTKVEALQRTQRHILGEDLVHLGMKELQQLENQLDMSLKKIRSTKTQFMHVQISELQGKEEMLLEANTGLRRKLEE 173 45778899***********************************************************************************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 235 aa Download sequence
MGRGKVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIVFST SGKLYEFCSG 60 PSIAKTLERY QRCTYGELGA SQSAEDEQSR YQEYLNLKTK VEALQRTQRH ILGEDLVHLG 120 MKELQQLENQ LDMSLKKIRS TKTQFMHVQI SELQGKEEML LEANTGLRRK LEEITAGLQR 180 SWNSNHQAAQ LEGFPEHLQS TNALQIGTPV VTNDEANVAT SSAQSGTGFF PGWML

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G03710.1	2e-88	MIKC_MADS family protein