PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP001822.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

RAV

Protein Properties

Length: 416aa MW: 45646.1 Da PI: 9.5994

Description

RAV family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP001822.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	43.1	1.1e-13	76	124	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+ykGV + +grW A+I++ ++r++lg+f ++eAa+a++ a+++++g PCP001822.1 76 SKYKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNEEDEAARAYDVAAQRFRG 124 89**9888.8*****3.....5******99***********98 PP
2	B3	96	2.5e-30	213	322	1	96
EEEE-..-HHHHTT-EE--HHH.HTT..............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 f+k+ tpsdv+k++rlv+pk++ae+h ++ +++ l +ed g++W+++++y+++s++yvltkGW++Fvk+++Lk+gD+v F++ PCP001822.1 213 FEKAVTPSDVGKLNRLVIPKQYAEKHfplqsgstatvtvsASSACKGVLLNFEDVGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDIVSFQR 310 89***********************999766666655533344999***********************************************8 PP -SSSEE..EEEE CS B3 85 dgrsefelvvkv 96 + +++l++ + PCP001822.1 311 STGPDKQLYIDW 322 766777777765 PP

Sequence ? help Back to Top
Protein Sequence Length: 416 aa Download sequence
MDGISSTEES TTSDSISISP PHHIVTRVEP LAKSAPQVDS LCRVGSGASS VILDSDLSSS 60 GGTGGVEAES RKLPSSKYKG VVPQPNGRWG AQIYEKHQRV WLGTFNEEDE AARAYDVAAQ 120 RFRGRDAVTN LKPSSAEPIF SDDEENDDVE AVFLSSHSKS EIVDMLRKHT YNDELEQSKR 180 NYCAYGKRGR SNGPLGLFGM DNSRVQKARE QLFEKAVTPS DVGKLNRLVI PKQYAEKHFP 240 LQSGSTATVT VSASSACKGV LLNFEDVGGK VWRFRYSYWN SSQSYVLTKG WSRFVKEKNL 300 KAGDIVSFQR STGPDKQLYI DWKTRMSVNN NSNGSNPVQG QVAPVQMVRL FGVNIFKIPG 360 SVGAGPVDAA AAAAIGGGCN NNIGKRMREM ELLKLEFSKK PRIIXXXXXX XXXKLV

Sequence ? help Back to Top

Protein Sequence Length: 416 aa Download sequence

MDGISSTEES TTSDSISISP PHHIVTRVEP LAKSAPQVDS LCRVGSGASS VILDSDLSSS  60
GGTGGVEAES RKLPSSKYKG VVPQPNGRWG AQIYEKHQRV WLGTFNEEDE AARAYDVAAQ  120
RFRGRDAVTN LKPSSAEPIF SDDEENDDVE AVFLSSHSKS EIVDMLRKHT YNDELEQSKR  180
NYCAYGKRGR SNGPLGLFGM DNSRVQKARE QLFEKAVTPS DVGKLNRLVI PKQYAEKHFP  240
LQSGSTATVT VSASSACKGV LLNFEDVGGK VWRFRYSYWN SSQSYVLTKG WSRFVKEKNL  300
KAGDIVSFQR STGPDKQLYI DWKTRMSVNN NSNGSNPVQG QVAPVQMVRL FGVNIFKIPG  360
SVGAGPVDAA AAAAIGGGCN NNIGKRMREM ELLKLEFSKK PRIIXXXXXX XXXKLV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G13260.1	1e-126	RAV family protein