PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP001826.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

NAC

Protein Properties

Length: 455aa MW: 51487.3 Da PI: 4.4988

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP001826.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	102.4	6.2e-32	58	196	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk.....leleevikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk....sgyWka 85 lp+G++F+Ptd+e++++ ++k+ g++ ++++ i +vd i+ ++P++Lp +vk + + +fF+++ k+y+tg+rk+r+++ + +W++ PCP001826.1 58 LPKGVKFDPTDQEIIWHLIAKSGVGDRkphpfIDEF--ILTVDddegICCSHPRKLP-SVKLDGSASHFFHRAIKAYNTGTRKRRKIHdgdgDVRWHK 152 799**********888877755555576543333..433322344******.667788999**************9883433446* PP NAM 86 tgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 tg++k+v+ +g + g+kk++v+y + r +k++kt+Wvmh+y+l PCP001826.1 153 TGRTKPVIL-DGLQRGCKKIMVLYmsTVRGEKPVKTNWVMHQYHL 196 *******.999*******6656999999*******98 PP

Sequence ? help Back to Top
Protein Sequence Length: 455 aa Download sequence
MAGPSWLVDK YRIATKIKSA SGRYDPDVII WQSNPTKACP KCQYTIDNSD VAQEWPGLPK 60 GVKFDPTDQE IIWHLIAKSG VGDRKPHPFI DEFILTVDDD EGICCSHPRK LPSVKLDGSA 120 SHFFHRAIKA YNTGTRKRRK IHDGDGDVRW HKTGRTKPVI LDGLQRGCKK IMVLYMSTVR 180 GEKPVKTNWV MHQYHLGVEE DEKDGEYVIS KIYYQQQEAK EADKTDQDVP ESIDAVITKV 240 DPVTPKSVTP EPPRAERKLG DFDLGLDTPA PSRDPFLQYR VEDGAEDEDE VHFEVDRALD 300 EIHPEVDCAE DDVCPESEMP DDYDQHKLEN QADEVINNTE NIAQEDPKWW DSESQNLLDS 360 QQLVEGLSLC DDLLQSQSPT RGGRENGEQA HIKPRLADYA KLGPEDLKRD LEACQNLVLD 420 PANILELDTP PDFRLSQLEF GSQESFLSWG GKVAD

Sequence ? help Back to Top

Protein Sequence Length: 455 aa Download sequence

MAGPSWLVDK YRIATKIKSA SGRYDPDVII WQSNPTKACP KCQYTIDNSD VAQEWPGLPK  60
GVKFDPTDQE IIWHLIAKSG VGDRKPHPFI DEFILTVDDD EGICCSHPRK LPSVKLDGSA  120
SHFFHRAIKA YNTGTRKRRK IHDGDGDVRW HKTGRTKPVI LDGLQRGCKK IMVLYMSTVR  180
GEKPVKTNWV MHQYHLGVEE DEKDGEYVIS KIYYQQQEAK EADKTDQDVP ESIDAVITKV  240
DPVTPKSVTP EPPRAERKLG DFDLGLDTPA PSRDPFLQYR VEDGAEDEDE VHFEVDRALD  300
EIHPEVDCAE DDVCPESEMP DDYDQHKLEN QADEVINNTE NIAQEDPKWW DSESQNLLDS  360
QQLVEGLSLC DDLLQSQSPT RGGRENGEQA HIKPRLADYA KLGPEDLKRD LEACQNLVLD  420
PANILELDTP PDFRLSQLEF GSQESFLSWG GKVAD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25580.1	1e-169	NAC family protein