PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP002223.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

MIKC_MADS

Protein Properties

Length: 252aa MW: 28852 Da PI: 7.8224

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP002223.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	95.2	2.9e-30	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien + rqvtfskRrng+lKKA+ELSvLCdaevaviifs+++klye++s PCP002223.1 9 KRIENATSRQVTFSKRRNGLLKKAYELSVLCDAEVAVIIFSQKDKLYEFCS 59 79***********************************************96 PP
2	K-box	71.7	2.3e-24	77	170	4	97
K-box 4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 +++k e++ ++l++e+a + k+ie L+ +qR+llG+dL+s+ ++eLq++ +qLe+sl++iR++ +ll+eq+e+l+ ke l +en +Lr++ PCP002223.1 77 QTNKVEVEQQVQHLKHEAAIMTKKIEILEASQRKLLGNDLDSCVVEELQEISSQLERSLRSIREREAQLLMEQMENLKAKETLLLQENAKLREE 170 3444478999*********************************************************************************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 252 aa Download sequence
MVRGKIEMKR IENATSRQVT FSKRRNGLLK KAYELSVLCD AEVAVIIFSQ KDKLYEFCSS 60 DMQETLTRYH KYAKDEQTNK VEVEQQVQHL KHEAAIMTKK IEILEASQRK LLGNDLDSCV 120 VEELQEISSQ LERSLRSIRE REAQLLMEQM ENLKAKETLL LQENAKLREE SGAKLLMEHS 180 AQEKRRSASV SCEKARASAS VNCWSQSIMS SEVETELFIG PPIMRSVDRI AVYSNIHQIN 240 NNACQSSPKT IP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G62165.3	1e-65	MIKC_MADS family protein