PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP002224.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family MIKC_MADS
Protein Properties Length: 225aa    MW: 25743.5 Da    PI: 9.5023
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP002224.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF947e-30959151
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                 krien   rqvtfskRrng+lKKA+ELSvLCdaevaviifs+++klye++s
  PCP002224.1  9 KRIENAASRQVTFSKRRNGLLKKAYELSVLCDAEVAVIIFSQKDKLYEFCS 59
                 79***********************************************96 PP
2K-box645.6e-2277158484
        K-box   4 ssgks.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkke 84 
                   ++++   e++ ++l++e+a + k+ie L+ +qR+llG+dL+s+ ++eLq++ +qLe+sl++iR++K +l++eq+e+l+ k 
  PCP002224.1  77 EQTNKvEVEQHVQHLKHESAIMAKKIEILEATQRKLLGNDLDSCLVEELQEMSSQLERSLRSIRERKAQLFMEQMEQLKAKS 158
                  34444478999********************************************************************996 PP
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    
MVRGKIEMKR IENAASRQVT FSKRRNGLLK KAYELSVLCD AEVAVIIFSQ KDKLYEFCSS  60
DMRDTLTRYR KYAKDHEQTN KVEVEQHVQH LKHESAIMAK KIEILEATQR KLLGNDLDSC  120
LVEELQEMSS QLERSLRSIR ERKAQLFMEQ MEQLKAKSGA KLWMEHSAQE KGASTSLSYE  180
KAGVSASVNY RSQGSMSSEV ETELFIGPPI MRAVGASQPR STYIR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62165.32e-75MIKC_MADS family protein