PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP002257.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

MYB_related

Protein Properties

Length: 844aa MW: 91652 Da PI: 4.5847

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP002257.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	34.6	4.3e-11	684	732	2	47
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 +rW+ E+e l +v+++G+g+Wk+I + + Rt+ ++k++w++ PCP002257.1 684 KRWSLLEEETLRTGVQKYGKGNWKLILNSYRdifEERTEVDLKDKWRNM 732 59*********************************************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 844 aa Download sequence
MDSDVDVSRW VIELLLRDRE KDCIAKRVLA VAPFSDQDYR LKKTVLLRTI ECEVYEASVS 60 ESILETLETI EDLDIREGIS TTESMKAAYC AVATECTVKF LVGFMGKPSG KYLDAVDRIW 120 RGRVGVLERS GRSQLVSAEL RHRMDEVEAG VWDLRVSKKL SRMNTRNDAL RLLAVYVKAA 180 LALLGPPFIT WAIRLNVPKE VADLEADQIT VANEANVGCG SEVEGQKKKG AYAGDGPELD 240 VQMANGDNVG AGVSELENQM ANRANVGGDG GSELDAQMAN QANVGVRRLD LEAETENETT 300 VGGRSDMEVQ MENETDAGDG SELEEQMVNG TNVGDGDQLE EQTRKEANVT GDSELEAQMM 360 SGASLIDRSE PESQTVNGTN EGVRSQRQAQ TTNGSNVGSQ SALEEQPLNE TNLVDESELG 420 PISVAVPLKE VRAGSSPSAN GELDLSIDHT TKDKENQSAV PRHKHLAHRR TRGPIRIGDA 480 EDSSTEVPNR KFGSPSSPEV NKAQEALKTS ISELQEVVTD PLPDALRVSE TVRSGLAVRS 540 ANHVNGKDVG ADNPSIEKGA GPVQSNNDNV GNLPSGHQND PQSSGIENDV PNPPVDQGGT 600 ESVQTDAANL RNASLNNQNN VARPSLMERN STARTFEWED SIDTSQEGTK KDAGRLHLPS 660 PKRTAVSPLK KYGNIRLTKR RKVKRWSLLE EETLRTGVQK YGKGNWKLIL NSYRDIFEER 720 TEVDLKDKWR NMEGAAFTVV LLSMLVTAPY TVNATVTCGQ VVTLLTPCIP FGVFGGDVPP 780 DCCAGIKGLH DIQNTAEDRR TACSCIQQGA AMIPGLDYDR VNTLGDRCGS PCPYTVYPST 840 NCSE

Sequence ? help Back to Top

Protein Sequence Length: 844 aa Download sequence

MDSDVDVSRW VIELLLRDRE KDCIAKRVLA VAPFSDQDYR LKKTVLLRTI ECEVYEASVS  60
ESILETLETI EDLDIREGIS TTESMKAAYC AVATECTVKF LVGFMGKPSG KYLDAVDRIW  120
RGRVGVLERS GRSQLVSAEL RHRMDEVEAG VWDLRVSKKL SRMNTRNDAL RLLAVYVKAA  180
LALLGPPFIT WAIRLNVPKE VADLEADQIT VANEANVGCG SEVEGQKKKG AYAGDGPELD  240
VQMANGDNVG AGVSELENQM ANRANVGGDG GSELDAQMAN QANVGVRRLD LEAETENETT  300
VGGRSDMEVQ MENETDAGDG SELEEQMVNG TNVGDGDQLE EQTRKEANVT GDSELEAQMM  360
SGASLIDRSE PESQTVNGTN EGVRSQRQAQ TTNGSNVGSQ SALEEQPLNE TNLVDESELG  420
PISVAVPLKE VRAGSSPSAN GELDLSIDHT TKDKENQSAV PRHKHLAHRR TRGPIRIGDA  480
EDSSTEVPNR KFGSPSSPEV NKAQEALKTS ISELQEVVTD PLPDALRVSE TVRSGLAVRS  540
ANHVNGKDVG ADNPSIEKGA GPVQSNNDNV GNLPSGHQND PQSSGIENDV PNPPVDQGGT  600
ESVQTDAANL RNASLNNQNN VARPSLMERN STARTFEWED SIDTSQEGTK KDAGRLHLPS  660
PKRTAVSPLK KYGNIRLTKR RKVKRWSLLE EETLRTGVQK YGKGNWKLIL NSYRDIFEER  720
TEVDLKDKWR NMEGAAFTVV LLSMLVTAPY TVNATVTCGQ VVTLLTPCIP FGVFGGDVPP  780
DCCAGIKGLH DIQNTAEDRR TACSCIQQGA AMIPGLDYDR VNTLGDRCGS PCPYTVYPST  840
NCSE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58340.2	7e-15	MYB_related family protein