PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP002310.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

bHLH

Protein Properties

Length: 628aa MW: 69946.8 Da PI: 6.6836

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP002310.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	31.4	3.5e-10	367	412	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri +++ +L++l P +k + ae+L +Ave+Ik+Lq PCP002310.1 367 SIAERMRRMRISERMKKLQDLFPDM----DKQINTAEMLDLAVEFIKDLQ 412 689*******************7....688***************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 628 aa Download sequence
MSSLLYKYNP NFKASEGELR KNHTAEFMDS NIFQQQHPQQ QQQSSSLTRY RSAPSSFLME 60 LMDNNGGGGV EDLRYLQPSS PEVETVLARF ISSCNEPDHH DNGVQHHQFE IEERPVNVKE 120 ESGDSVSNHS NGYSNSTHMM YQASQAQQVH GLDSSSFAAV NSTVMENSMM QSKIGVGNRS 180 NLVRQSSSPA GFFPNLAVDN GFNVMKDSAG YRAGNGVSGE ASPSTSRLGN QLNFSSRPSS 240 YSHRMPRIAE NENGNSGEGS QPQPNHGLGD ANGSNSHYHS SFPNDSWENS SFNDLKRARD 300 NDGNKFSTSI AFKSQNNDLG NHNHGLTQHL SLPKQFEMPA MEKYLQFEDS IPCKIRAKRG 360 FATHPRSIAE RMRRMRISER MKKLQDLFPD MDKQINTAEM LDLAVEFIKD LQKQVKKIDY 420 VFKVVLIGDS AVGKSQLLAR FARNEFSLES KATIGVEFQT KTLVIDHKTI KAQIWDTAGQ 480 ERYRAVTSAY YRGSVGAMLV YDITKPQSFD HVTKWLEELR AHADNNIVVM LVGNKSDLGT 540 LRAVPSEDAK EFAQRENLFF MEASALEATN VESAFVTVLT EIYRILGKKS LIPNEEAESG 600 SSSLLKGTKL VVPGQEPEPQ ASSCCWSS

Sequence ? help Back to Top

Protein Sequence Length: 628 aa Download sequence

MSSLLYKYNP NFKASEGELR KNHTAEFMDS NIFQQQHPQQ QQQSSSLTRY RSAPSSFLME  60
LMDNNGGGGV EDLRYLQPSS PEVETVLARF ISSCNEPDHH DNGVQHHQFE IEERPVNVKE  120
ESGDSVSNHS NGYSNSTHMM YQASQAQQVH GLDSSSFAAV NSTVMENSMM QSKIGVGNRS  180
NLVRQSSSPA GFFPNLAVDN GFNVMKDSAG YRAGNGVSGE ASPSTSRLGN QLNFSSRPSS  240
YSHRMPRIAE NENGNSGEGS QPQPNHGLGD ANGSNSHYHS SFPNDSWENS SFNDLKRARD  300
NDGNKFSTSI AFKSQNNDLG NHNHGLTQHL SLPKQFEMPA MEKYLQFEDS IPCKIRAKRG  360
FATHPRSIAE RMRRMRISER MKKLQDLFPD MDKQINTAEM LDLAVEFIKD LQKQVKKIDY  420
VFKVVLIGDS AVGKSQLLAR FARNEFSLES KATIGVEFQT KTLVIDHKTI KAQIWDTAGQ  480
ERYRAVTSAY YRGSVGAMLV YDITKPQSFD HVTKWLEELR AHADNNIVVM LVGNKSDLGT  540
LRAVPSEDAK EFAQRENLFF MEASALEATN VESAFVTVLT EIYRILGKKS LIPNEEAESG  600
SSSLLKGTKL VVPGQEPEPQ ASSCCWSS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42280.1	3e-41	bHLH family protein