PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP002425.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

CAMTA

Protein Properties

Length: 1283aa MW: 144763 Da PI: 7.278

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP002425.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	163.6	3.5e-51	305	420	3	117
CG-1 3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcy 99 +e k+rwl++ ei++iL n++++elt++++ rp+ gsl L++rk +ryfrkD ++w+kkkdgktv+E+hekLK g+v+vl+cyYah+e+n++fq r+y PCP002425.1 305 QEsKNRWLRPAEICEILRNYQNFELTTHPPVRPPGGSLYLFDRKALRYFRKDSHHWRKKKDGKTVKEAHEKLKAGSVDVLHCYYAHGEDNANFQCRSY 402 4559******************************************************************************************** PP CG-1 100 wlLeeelekivlvhylev 117 w+L+++l++ivlvhy++v PCP002425.1 403 WMLDTHLQHIVLVHYRNV 420 **************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 1283 aa Download sequence
MTMGTTTQAY GESRYWDNRY ANESGSFDWY QKYQSLAPLI NLYVPRHPNQ HNRILVVGCG 60 NSGTYSAFSL HPHSPDQMIQ ISHLIHTQNS KGIGFQNAAF SEGMVDDGYE DVVSIDISSV 120 VVQTMQSKYS NRPHLKYLQM DVRDMSAFET ASFDAVVDKG TLDSLLCGSN SRQNATEMLE 180 EVWRLKRLIT TCRVLKDKGV YFLVTYGAPL YRLRLLRESC SWMIKLHVIG KLSREDKPEP 240 PIWDLTNPVP LHGDGRSSAE ELLGNNPDVH YIYICTKVGG TNFLSWQFSA CLSDRSEVYL 300 SQILQESKNR WLRPAEICEI LRNYQNFELT THPPVRPPGG SLYLFDRKAL RYFRKDSHHW 360 RKKKDGKTVK EAHEKLKAGS VDVLHCYYAH GEDNANFQCR SYWMLDTHLQ HIVLVHYRNV 420 EEANSAARMF QTSFASSPVQ TSFASSPVRT SFASSPNRVD LSGQTLSTEF EDVDSWRDAG 480 ISSIEQLMLG SIFHNASLLP QKNWRCLWCF SGFPESFRDP SSTWYGGPKF DHGAGLSSWH 540 GVDSSTRNEH SMHAQNLFVE EPIRVDFITN KLTDSRVDVR SGVNDVTCED RLTTNIDVQI 600 VSAPSQREDQ VPKEHVFDVF HPQVQDYTDP QTLVTPSNQV RENYRDGGVH NVELKKLDSF 660 GRWMDNEIGV DCDDSLMASD SGNYWSTFDA ESGDKEVSSL SHHMQLDIDS LGPFLSQEQL 720 FSISDFSPDW AYSGTETKVL IVGSFLGSKK DSGDTNWGCM FGEIEVSAEI LSNNAIRCQT 780 PLHAPGRVPF YVTGRNRLAC SEIREFKYRE NPIGIAINNL QDDELHLQIR LAKLLSLGSE 840 RKWLICAVPD CDKCKLKSSI FSMRGNSESD WVTIDGASVS CKSDHLSRRD AVIQNLLKDR 900 LCEWLVCKIH GGGKGPHVLD NEGQGVLHLT AALGYEWAIG PTIAAGVSTN FRDARGRTGL 960 HWASYFGREE IVITLLQLGA APGAVEDPTS IFPGGQTAAD LASSRGHKGI AGYLAEADLT 1020 SHLEFLTMNE NIMNNVTATI AAENANQTAE VAASDPVDEQ HSLKNPIAAV RKSAHAAALI 1080 QEAFRARSFR QRQLTKGRTD VSEVPSQDLV ARRSLKRVQK FAHYEDYLHV AAALKIQKNY 1140 RGWKGRKDYL KIRDRIVKIQ AHVRGHQVRK NYKKVLWSVG VLEKVILRWR RRGTGLRGFR 1200 VEKPTEDASS EVKKNDDYEF LRVGWKQKFA GVEKALARVQ SMARQPEARE QYTRLISNFE 1260 KLEMADGKNQ ASNQNESSDQ KVR

Sequence ? help Back to Top

Protein Sequence Length: 1283 aa Download sequence

MTMGTTTQAY GESRYWDNRY ANESGSFDWY QKYQSLAPLI NLYVPRHPNQ HNRILVVGCG  60
NSGTYSAFSL HPHSPDQMIQ ISHLIHTQNS KGIGFQNAAF SEGMVDDGYE DVVSIDISSV  120
VVQTMQSKYS NRPHLKYLQM DVRDMSAFET ASFDAVVDKG TLDSLLCGSN SRQNATEMLE  180
EVWRLKRLIT TCRVLKDKGV YFLVTYGAPL YRLRLLRESC SWMIKLHVIG KLSREDKPEP  240
PIWDLTNPVP LHGDGRSSAE ELLGNNPDVH YIYICTKVGG TNFLSWQFSA CLSDRSEVYL  300
SQILQESKNR WLRPAEICEI LRNYQNFELT THPPVRPPGG SLYLFDRKAL RYFRKDSHHW  360
RKKKDGKTVK EAHEKLKAGS VDVLHCYYAH GEDNANFQCR SYWMLDTHLQ HIVLVHYRNV  420
EEANSAARMF QTSFASSPVQ TSFASSPVRT SFASSPNRVD LSGQTLSTEF EDVDSWRDAG  480
ISSIEQLMLG SIFHNASLLP QKNWRCLWCF SGFPESFRDP SSTWYGGPKF DHGAGLSSWH  540
GVDSSTRNEH SMHAQNLFVE EPIRVDFITN KLTDSRVDVR SGVNDVTCED RLTTNIDVQI  600
VSAPSQREDQ VPKEHVFDVF HPQVQDYTDP QTLVTPSNQV RENYRDGGVH NVELKKLDSF  660
GRWMDNEIGV DCDDSLMASD SGNYWSTFDA ESGDKEVSSL SHHMQLDIDS LGPFLSQEQL  720
FSISDFSPDW AYSGTETKVL IVGSFLGSKK DSGDTNWGCM FGEIEVSAEI LSNNAIRCQT  780
PLHAPGRVPF YVTGRNRLAC SEIREFKYRE NPIGIAINNL QDDELHLQIR LAKLLSLGSE  840
RKWLICAVPD CDKCKLKSSI FSMRGNSESD WVTIDGASVS CKSDHLSRRD AVIQNLLKDR  900
LCEWLVCKIH GGGKGPHVLD NEGQGVLHLT AALGYEWAIG PTIAAGVSTN FRDARGRTGL  960
HWASYFGREE IVITLLQLGA APGAVEDPTS IFPGGQTAAD LASSRGHKGI AGYLAEADLT  1020
SHLEFLTMNE NIMNNVTATI AAENANQTAE VAASDPVDEQ HSLKNPIAAV RKSAHAAALI  1080
QEAFRARSFR QRQLTKGRTD VSEVPSQDLV ARRSLKRVQK FAHYEDYLHV AAALKIQKNY  1140
RGWKGRKDYL KIRDRIVKIQ AHVRGHQVRK NYKKVLWSVG VLEKVILRWR RRGTGLRGFR  1200
VEKPTEDASS EVKKNDDYEF LRVGWKQKFA GVEKALARVQ SMARQPEARE QYTRLISNFE  1260
KLEMADGKNQ ASNQNESSDQ KVR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G09410.2	0.0	CAMTA family protein