PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP002601.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family MYB_related
Protein Properties Length: 186aa    MW: 21210.4 Da    PI: 6.4138
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP002601.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.59.6e-16243548
                     -HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     ++eE +l+++ +k+lG++ W++Ia +++ gRt++++k++w+++l
      PCP002601.1  2 SQEEKDLIIRMHKLLGNR-WSLIAGRLP-GRTDNEVKNYWNTHL 43
                     89****************.*********.************996 PP
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    
MSQEEKDLII RMHKLLGNRW SLIAGRLPGR TDNEVKNYWN THLNKNTSCC PAGGKRKGTT  60
MTDYSNHDTN ITKKKNKINT SKTSRTATAT ADNPTADNPM IISSTVRSPK DTNSDHHHQH  120
HEEPNDGPIF ATTSTTEESC FYYDVDIESP RELHYYMPNC SSNFNPAFVF DDEPFIGYMD  180
PFLLFD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52600.13e-25MYB family protein