PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP002618.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

LBD

Protein Properties

Length: 1947aa MW: 219967 Da PI: 5.6236

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP002618.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	122.9	1.6e-38	1652	1752	1	101
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelal 96 aCaaCk++rrkC+++C+lapyfpa+qpk ++n+hklFG+sn+lk+lk+l++ ++ +am+s++y+A+ r + PvyG+ +vi++lq q+ ++++l++ PCP002618.1 1652 ACAACKYQRRKCTAECPLAPYFPADQPKMYQNAHKLFGVSNILKILKNLDPRQKLEAMRSIIYQANLRDKFPVYGCWEVIRQLQYQILAAEEQLQA 1747 7*********************************************************************************************** PP DUF260 97 lkeel 101 ++++l PCP002618.1 1748 VHQQL 1752 *9986 PP

Sequence ? help Back to Top
Protein Sequence Length: 1947 aa Download sequence
MGHKKRNAAP RPKQSPAADG DAVVSSQSDT TLAAAETDVP LLPNNKIESS PLPMIESDGS 60 AAKVECERAL TALRRGNHTK ALRLMKESCQ RYENSAQSAL IHRVQGTVCV KVASIIDDPN 120 SKQRHLRNAI DSARRAVELS PSSIEFAHFY ANLLYEAAND GKEYEEVVAE CERALAIEKP 180 VDPARESLQE ESQQKILTAD ARIGHVQNEL RQLIQKSNIA SISTWMKNLG NGEEKFRLIP 240 IRRATEDPME VRLVQTRRPN EIKKVTKTPE ERRKEIEVRV AAARLLQQKS EVPQLGNEGE 300 KSDRGLDSSS GFSQRGSERR KYGNLKKNGS SAERKDWVLS YWKSLSVDMK KELLKHVVQE 360 HMGNLMPKMQ SILPQNVDNE WTEMLLNSSW KPLDASSAVG MLRDQRKCKE HEFVEDFYSG 420 NQNKDCDECF KDAWDSSPEK EMLGDSPSDC IVEGNNHEKL ARVECEEETG LLTYSSVANG 480 WPVSDDSERQ KLLERIHALF EVLIRHKYLA ASHLNRVIQF TMDELQASCS QLLNHGVEQT 540 PMCIFFLGAT QLRKILKFLQ DLSHACGLGR YSDKSSSPAD DANSTNKCVE IKERIVLNGD 600 ASCLILDECL LSSECTCDVG HLTVSEAAPA AVVGNGNGVP PDSDALLSWM FAGPTSGEQL 660 TSWVHAKEEK TQQGMEILQM LEKEFYDLQS LCDRKCEHLS YEEALQAVED LCIEEGKKRE 720 NVTEFGHRSF ESVLRKRREE LLERENDVMF LSNRFELDAI SNVLKEYEAL NINQFGYEET 780 YGRVTSQLCD LEYGEYDDWR AKDYAHQVDT YVEVAIQRQK EQLYVELSKI DVRIMRNVTG 840 MQQLEAKLEP VSAHDYRSIL LPLVKSYLRA HLEDLAEKDA TEKSDAAREA FLAELALDSK 900 KGVRGENDNL RHTQEKTKDK KKNKEFRKAK DSKGNGVSDE YFHHDETSEL SFPEASDGEL 960 PDPELVISVN GNDLKQREEE SKRKIELEEE ERKLEETLEY QRQIEKEAKQ KHLAEQNKKS 1020 TQWHPEKVVE GLDDVNLESC ANGHDVNEPF KPSVQEQLTQ KAGFPNNLEG LPVNMANGSV 1080 VPANSSTASG AHQAKVNQGL ANGGIVEEDV YLPSDRRTGR KNRRQRSSTK VPDGKSQGLS 1140 SGNKNVEVGR SSVVGSHDNL LMNNNNGIQE LRQKRAEEDD EERFQADLKK AVRQSLDTFE 1200 ERQKFPVVSS LRMPRKISAD VDNSVLHNDI TNENASETDI FGTGLKNEVG EYNCFLNVII 1260 QSLWHVRLFR DEYLRRSTSE HVHVGDPCVV CALYEIFTAL SNASADTRRE AVAPTSLRIA 1320 LSNLYPESNF FQEAQMNDAS EVLVVIFNCL HQSFTPGSSL SNAESVESSC PGSWDCSNNA 1380 CIAHSIFGMD IFERMNCYYC GLESRHLKYT SFFHNINASA LRTMKVMSTE SSYDELLNHV 1440 EMNHQLACDP EAGGCGKLNH IHHILSTPPH VFTTVLGWQK TCESADDIKA TLAALNTEID 1500 ISVLYRGLDP KTTHNLVSVV CYYGQHYHCF AYSHDRGCWI MYDDKTVKVI GGWADVLTMC 1560 ERGHLQPQQI RTFPDPFRSK KMLSIPPPPF LLPLLLLLQL TATLLLLLFN FKHCTTLLSD 1620 CFRDFSRSRL LDWFRLRFGI RKMPLKGATL QACAACKYQR RKCTAECPLA PYFPADQPKM 1680 YQNAHKLFGV SNILKILKNL DPRQKLEAMR SIIYQANLRD KFPVYGCWEV IRQLQYQILA 1740 AEEQLQAVHQ QLAMYRQHHH HHQQISSMPE YVMSQLELGM APPNNPLALF DYNLPPCILT 1800 NNNNATAVAP VNQHQQQSYS NSSSAAYNSD SKDNVNNNNN NAGNQLWSSN PFMTNNSNNN 1860 NNDNNSEAIE SELGALQQLS IQPDVVQDYN ELHPFFDTTD DRQSYIDSKE AYDSSSDESF 1920 KGTTQSMEHA EIALKNDAAC FSLTSVN

Sequence ? help Back to Top

Protein Sequence Length: 1947 aa Download sequence

MGHKKRNAAP RPKQSPAADG DAVVSSQSDT TLAAAETDVP LLPNNKIESS PLPMIESDGS  60
AAKVECERAL TALRRGNHTK ALRLMKESCQ RYENSAQSAL IHRVQGTVCV KVASIIDDPN  120
SKQRHLRNAI DSARRAVELS PSSIEFAHFY ANLLYEAAND GKEYEEVVAE CERALAIEKP  180
VDPARESLQE ESQQKILTAD ARIGHVQNEL RQLIQKSNIA SISTWMKNLG NGEEKFRLIP  240
IRRATEDPME VRLVQTRRPN EIKKVTKTPE ERRKEIEVRV AAARLLQQKS EVPQLGNEGE  300
KSDRGLDSSS GFSQRGSERR KYGNLKKNGS SAERKDWVLS YWKSLSVDMK KELLKHVVQE  360
HMGNLMPKMQ SILPQNVDNE WTEMLLNSSW KPLDASSAVG MLRDQRKCKE HEFVEDFYSG  420
NQNKDCDECF KDAWDSSPEK EMLGDSPSDC IVEGNNHEKL ARVECEEETG LLTYSSVANG  480
WPVSDDSERQ KLLERIHALF EVLIRHKYLA ASHLNRVIQF TMDELQASCS QLLNHGVEQT  540
PMCIFFLGAT QLRKILKFLQ DLSHACGLGR YSDKSSSPAD DANSTNKCVE IKERIVLNGD  600
ASCLILDECL LSSECTCDVG HLTVSEAAPA AVVGNGNGVP PDSDALLSWM FAGPTSGEQL  660
TSWVHAKEEK TQQGMEILQM LEKEFYDLQS LCDRKCEHLS YEEALQAVED LCIEEGKKRE  720
NVTEFGHRSF ESVLRKRREE LLERENDVMF LSNRFELDAI SNVLKEYEAL NINQFGYEET  780
YGRVTSQLCD LEYGEYDDWR AKDYAHQVDT YVEVAIQRQK EQLYVELSKI DVRIMRNVTG  840
MQQLEAKLEP VSAHDYRSIL LPLVKSYLRA HLEDLAEKDA TEKSDAAREA FLAELALDSK  900
KGVRGENDNL RHTQEKTKDK KKNKEFRKAK DSKGNGVSDE YFHHDETSEL SFPEASDGEL  960
PDPELVISVN GNDLKQREEE SKRKIELEEE ERKLEETLEY QRQIEKEAKQ KHLAEQNKKS  1020
TQWHPEKVVE GLDDVNLESC ANGHDVNEPF KPSVQEQLTQ KAGFPNNLEG LPVNMANGSV  1080
VPANSSTASG AHQAKVNQGL ANGGIVEEDV YLPSDRRTGR KNRRQRSSTK VPDGKSQGLS  1140
SGNKNVEVGR SSVVGSHDNL LMNNNNGIQE LRQKRAEEDD EERFQADLKK AVRQSLDTFE  1200
ERQKFPVVSS LRMPRKISAD VDNSVLHNDI TNENASETDI FGTGLKNEVG EYNCFLNVII  1260
QSLWHVRLFR DEYLRRSTSE HVHVGDPCVV CALYEIFTAL SNASADTRRE AVAPTSLRIA  1320
LSNLYPESNF FQEAQMNDAS EVLVVIFNCL HQSFTPGSSL SNAESVESSC PGSWDCSNNA  1380
CIAHSIFGMD IFERMNCYYC GLESRHLKYT SFFHNINASA LRTMKVMSTE SSYDELLNHV  1440
EMNHQLACDP EAGGCGKLNH IHHILSTPPH VFTTVLGWQK TCESADDIKA TLAALNTEID  1500
ISVLYRGLDP KTTHNLVSVV CYYGQHYHCF AYSHDRGCWI MYDDKTVKVI GGWADVLTMC  1560
ERGHLQPQQI RTFPDPFRSK KMLSIPPPPF LLPLLLLLQL TATLLLLLFN FKHCTTLLSD  1620
CFRDFSRSRL LDWFRLRFGI RKMPLKGATL QACAACKYQR RKCTAECPLA PYFPADQPKM  1680
YQNAHKLFGV SNILKILKNL DPRQKLEAMR SIIYQANLRD KFPVYGCWEV IRQLQYQILA  1740
AEEQLQAVHQ QLAMYRQHHH HHQQISSMPE YVMSQLELGM APPNNPLALF DYNLPPCILT  1800
NNNNATAVAP VNQHQQQSYS NSSSAAYNSD SKDNVNNNNN NAGNQLWSSN PFMTNNSNNN  1860
NNDNNSEAIE SELGALQQLS IQPDVVQDYN ELHPFFDTTD DRQSYIDSKE AYDSSSDESF  1920
KGTTQSMEHA EIALKNDAAC FSLTSVN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	717	738	KKRENVTEFGHRSFESVLRKRR
2	1120	1126	RKNRRQR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47870.1	3e-45	LBD family protein