PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP002853.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

AP2

Protein Properties

Length: 468aa MW: 50516.1 Da PI: 8.3405

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP002853.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	52.4	1.3e-16	155	204	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g PCP002853.1 155 SEYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHSAARAYDRAAIKFRG 204 569****************......55**********************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 468 aa Download sequence
MLDLNVNFIT ITETNSVEVE DSGTSNSSVV NAEEALTPSN AGDEDSTNNT TSSFMFDILK 60 REKGGPRNYG AGDQAQSMQF VTRSLFPVTG DGGGGKEGEG YGLGLSSSSS PTARPQGLNL 120 SFAESGEQTQ AELRVVQQKK QPPRKSRRGP RSRSSEYRGV TFYRRTGRWE SHIWDCGKQV 180 YLGGFDTAHS AARAYDRAAI KFRGVDADIN FNLGDYEEDM KLLGDLNKED FVHALRRHST 240 GASRGNSKYR GVAAAALPKC GARWEDLMGQ VPGNNVFEKK AGKCRTGREA VANFDPNVYE 300 GEIVLQASIE GSGHNLDLSL GISQPCSTGK TGKGKFGDFQ CPKEKPMVNG FCSAAVGVGQ 360 PPHVLTMVAK HPALYPGFVQ KHEEMASGHN RLQPISSPRY TNWAWQVHGN SNNVSPMQVY 420 SIAASSGFPS STATTPPSAT YLPPNLQDGS ASAYNVRRLP FPAASSMY

Sequence ? help Back to Top

Protein Sequence Length: 468 aa Download sequence

MLDLNVNFIT ITETNSVEVE DSGTSNSSVV NAEEALTPSN AGDEDSTNNT TSSFMFDILK  60
REKGGPRNYG AGDQAQSMQF VTRSLFPVTG DGGGGKEGEG YGLGLSSSSS PTARPQGLNL  120
SFAESGEQTQ AELRVVQQKK QPPRKSRRGP RSRSSEYRGV TFYRRTGRWE SHIWDCGKQV  180
YLGGFDTAHS AARAYDRAAI KFRGVDADIN FNLGDYEEDM KLLGDLNKED FVHALRRHST  240
GASRGNSKYR GVAAAALPKC GARWEDLMGQ VPGNNVFEKK AGKCRTGREA VANFDPNVYE  300
GEIVLQASIE GSGHNLDLSL GISQPCSTGK TGKGKFGDFQ CPKEKPMVNG FCSAAVGVGQ  360
PPHVLTMVAK HPALYPGFVQ KHEEMASGHN RLQPISSPRY TNWAWQVHGN SNNVSPMQVY  420
SIAASSGFPS STATTPPSAT YLPPNLQDGS ASAYNVRRLP FPAASSMY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28550.2	8e-65	AP2 family protein