PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP002971.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

SBP

Protein Properties

Length: 1390aa MW: 153996 Da PI: 5.4381

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP002971.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	47.6	4.4e-15	511	541	48	78
SEEETTT--SS--S-STTTT-------S--- CS SBP 48 rfhelsefDeekrsCrrrLakhnerrrkkqa 78 rfh lsefDe+krsCrrrLa+hn+rrrk+qa PCP002971.1 511 RFHLLSEFDEGKRSCRRRLAGHNRRRRKTQA 541 9***************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 1390 aa Download sequence
MAKPYGRWFQ DDVLKKDYIR PTDKRFGLES DGVLGDEALL SEELDNLMDD AAEEPMLCGE 60 NGNVTLVPQP LLLFGTEITP RMGDNVSAQE VNEAFTGNLA FSLSGDSSRE MARRDGSFVR 120 DDSSFSLGSD PFNLAPFIFG PGAEQGHRPS GTEAKRHKSW SLLQHLWDTS NLPWYCMGDF 180 NEVLRAEEQE GGDLQSERQM EDFQNGLPCC QLQDLGFIGN PLSPFLFIVC VKGLSALFDT 240 WEAQGRIQGV QKWQKPDFGW IKCKFDAAWD EIESRGGIGI VVRNSEGKFI AAMVVRENGI 300 RFALHAENEG TSHRGLYGHL FADTRIVDNG LVSDSVLLLE ADADEDALVI SCGIYERRPS 360 SLLMSVKSMT YFLCVWVCLE SGMENAGGQV AAPIYFHQTL SGRFCDSPAM GRKRDHPYQG 420 PNYQDPHLQQ LRVTNPGNNW NPNVWDWDAV RFVAKPLDSE MQQLGTTFTT EQRNKEEATG 480 PVKNTAEDEH DESLQLNLAG GFTSVEEPVP RFHLLSEFDE GKRSCRRRLA GHNRRRRKTQ 540 AEDVTSRLTL PGGGDNKSIG NIDIVNLVAD IACPQGKNDV RNINGSSVLD REQLLQILSR 600 INSLPLPADL AAKLPNLGSL TRKASELLSL DLQNKLNGRA STATMDLLTV LSATLATSAP 660 EALAMLSQKC SQSSDSEKTK LTCSDQAAGP NLHKIPPQEI HSAGGERSST SYQSPMEDSD 720 CQVQETRVNL PLQLFSSSPE NDSLPKLASS RKYFSSDSSN PTEDRSPSSS PPVVHTLFPM 780 KSLAETVKSE KLLVSKEVSA NPDSSRTCRS NMPFDLFRGS NRGAEATSIQ SFPNQPGYTS 840 SGSDHSPSSL NSDAQDRTGR ILFKLFDKDP SHLPGTLRTQ IYNWLSNSPS EMESYIRPGC 900 VVLSVYVSMP PASWEQLEEN LVQHASSLVQ SSDSDFWRSG RFLVNTGRQL ASHKDEKIRT 960 CKAWRSCSSP ELISVAPLAV VGGQETSLLL RGRNLNTLGT RIHCTYMGGY TSKEATGSAY 1020 HGMMFDEINL GSFQIHDASP GVLGRCFIEV ENGFRGNSFP VIIADATICR ELKVLESVFD 1080 AESKVCDVIS EDESHDYGRP TSREEALHFL NELGWLFQRK RICSMLQEPH YALSRFKFLL 1140 TFSVEKDCCA LVKTLLDILF ERNFDSDTLL GGSVMLSDMQ LLNRAVKRRC RKMVDLLINY 1200 SIVNSDIDKR YIFPPNLAGP GSMTPLHLAA CMSSTDDMID ALTNDPQEIG LNCWNSVLDA 1260 SGQSPYAYAL MRNNYSYNNL VARKLADRRN SQVTVTIGNE RDQPQMSMEL EHRTNTRSRQ 1320 GSRSCTKCAI AATKYSRRVP GAQGLLQRPL IHSMLAIAAV CVCVCLFLRG SPDIGLVAPF 1380 KWENLEFGTI

Sequence ? help Back to Top

Protein Sequence Length: 1390 aa Download sequence

MAKPYGRWFQ DDVLKKDYIR PTDKRFGLES DGVLGDEALL SEELDNLMDD AAEEPMLCGE  60
NGNVTLVPQP LLLFGTEITP RMGDNVSAQE VNEAFTGNLA FSLSGDSSRE MARRDGSFVR  120
DDSSFSLGSD PFNLAPFIFG PGAEQGHRPS GTEAKRHKSW SLLQHLWDTS NLPWYCMGDF  180
NEVLRAEEQE GGDLQSERQM EDFQNGLPCC QLQDLGFIGN PLSPFLFIVC VKGLSALFDT  240
WEAQGRIQGV QKWQKPDFGW IKCKFDAAWD EIESRGGIGI VVRNSEGKFI AAMVVRENGI  300
RFALHAENEG TSHRGLYGHL FADTRIVDNG LVSDSVLLLE ADADEDALVI SCGIYERRPS  360
SLLMSVKSMT YFLCVWVCLE SGMENAGGQV AAPIYFHQTL SGRFCDSPAM GRKRDHPYQG  420
PNYQDPHLQQ LRVTNPGNNW NPNVWDWDAV RFVAKPLDSE MQQLGTTFTT EQRNKEEATG  480
PVKNTAEDEH DESLQLNLAG GFTSVEEPVP RFHLLSEFDE GKRSCRRRLA GHNRRRRKTQ  540
AEDVTSRLTL PGGGDNKSIG NIDIVNLVAD IACPQGKNDV RNINGSSVLD REQLLQILSR  600
INSLPLPADL AAKLPNLGSL TRKASELLSL DLQNKLNGRA STATMDLLTV LSATLATSAP  660
EALAMLSQKC SQSSDSEKTK LTCSDQAAGP NLHKIPPQEI HSAGGERSST SYQSPMEDSD  720
CQVQETRVNL PLQLFSSSPE NDSLPKLASS RKYFSSDSSN PTEDRSPSSS PPVVHTLFPM  780
KSLAETVKSE KLLVSKEVSA NPDSSRTCRS NMPFDLFRGS NRGAEATSIQ SFPNQPGYTS  840
SGSDHSPSSL NSDAQDRTGR ILFKLFDKDP SHLPGTLRTQ IYNWLSNSPS EMESYIRPGC  900
VVLSVYVSMP PASWEQLEEN LVQHASSLVQ SSDSDFWRSG RFLVNTGRQL ASHKDEKIRT  960
CKAWRSCSSP ELISVAPLAV VGGQETSLLL RGRNLNTLGT RIHCTYMGGY TSKEATGSAY  1020
HGMMFDEINL GSFQIHDASP GVLGRCFIEV ENGFRGNSFP VIIADATICR ELKVLESVFD  1080
AESKVCDVIS EDESHDYGRP TSREEALHFL NELGWLFQRK RICSMLQEPH YALSRFKFLL  1140
TFSVEKDCCA LVKTLLDILF ERNFDSDTLL GGSVMLSDMQ LLNRAVKRRC RKMVDLLINY  1200
SIVNSDIDKR YIFPPNLAGP GSMTPLHLAA CMSSTDDMID ALTNDPQEIG LNCWNSVLDA  1260
SGQSPYAYAL MRNNYSYNNL VARKLADRRN SQVTVTIGNE RDQPQMSMEL EHRTNTRSRQ  1320
GSRSCTKCAI AATKYSRRVP GAQGLLQRPL IHSMLAIAAV CVCVCLFLRG SPDIGLVAPF  1380
KWENLEFGTI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	1184	1189	RAVKRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G20980.1	0.0	SBP family protein