PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP003301.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family Whirly
Protein Properties Length: 276aa    MW: 30122.2 Da    PI: 10.3186
Description Whirly family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP003301.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Whirly216.72.2e-67992371139
       Whirly   1 svyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvrkalkveP 98 
                  s+yk+kaal+v++++p+f+ ldsg++kl+r+G++ll++a+a+++r ydW++kq+f+ls+te+++lv+l+skes effhdp++++s+eGk+rk+lkveP
  PCP003301.1  99 SIYKGKAALTVEPKAPEFTPLDSGAFKLSREGFVLLQFAPAAGVRVYDWSRKQVFSLSVTEIGSLVSLGSKESLEFFHDPFKGKSDEGKIRKVLKVEP 196
                  7************************************************************************************************* PP

       Whirly  99 lpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsllv 139
                  lpdGsG+f+nlsv+n+l++ +es+++P+++aefavl+s+++
  PCP003301.1 197 LPDGSGHFFNLSVQNKLINLDESIYIPITRAEFAVLKSAFN 237
                  **************************************996 PP
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    
MLKLHSLSSP ATAQNPHKSP SQFLSSQLSG RGRVFSTNTF GFAPSPSSST KRLSLKCRQS  60
EYFDQQRTST AASPNKPSPA SQTPAGVTGM APRIYVGHSI YKGKAALTVE PKAPEFTPLD  120
SGAFKLSREG FVLLQFAPAA GVRVYDWSRK QVFSLSVTEI GSLVSLGSKE SLEFFHDPFK  180
GKSDEGKIRK VLKVEPLPDG SGHFFNLSVQ NKLINLDESI YIPITRAEFA VLKSAFNFIL  240
PYILGWHAYA NSIKPEASGR ANNSGIKYGG DVEWSR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14410.11e-127Whirly family protein