PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP003314.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

HD-ZIP

Protein Properties

Length: 289aa MW: 32912.7 Da PI: 6.4373

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP003314.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	56.9	3.5e-18	81	134	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++ eq+++Le+ Fe +++ e++ +LA+ lgL+ rq+ +WFqNrRa++k PCP003314.1 81 KKRRLSMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWK 134 45689************************************************9 PP
2	HD-ZIP_I/II	132.9	1.1e-42	80	172	1	93
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 ekkrrls eqvk+LE++Fe +kLeperK++lar+Lglqprq+a+WFqnrRAR+ktkqlEkdy+ Lkr++da+k++n++L++++++L++e+++ PCP003314.1 80 EKKRRLSMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYDLLKRQFDAIKADNDALQSQNQKLQAEIMA 172 69**************************************************************************************99975 PP

Sequence ? help Back to Top
Protein Sequence Length: 289 aa Download sequence
MTTNGMAFFS TNFMLQTPHG HDDYQPPTSL NPMLPSCTPQ DFHGVASFLG KRSVSFSGIE 60 LGEDAHGEDD LSDDGSQVGE KKRRLSMEQV KTLEKNFELG NKLEPERKMQ LARALGLQPR 120 QIAIWFQNRR ARWKTKQLEK DYDLLKRQFD AIKADNDALQ SQNQKLQAEI MALKNREPAE 180 SINLNKDTEG SCSNRSENNS DIKLDISRTP AIDSPPSSHH HHHHQNPTLF SSSIIRPAQL 240 FQNTSRSEAM QCQKIDQMVK EESLTNMFCG IDDQSAAGFW PWLEQHQFN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	129	137	RRARWKTKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69780.1	1e-119	HD-ZIP family protein