PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP003345.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family M-type_MADS
Protein Properties Length: 351aa    MW: 39569.9 Da    PI: 7.527
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP003345.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF66.72.3e-21953145
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                 kr en+  rq t++kR+ngi+KKA+ELS+LCd+++ +++fs+tgk
  PCP003345.1  9 KRLENTNGRQATYAKRKNGIMKKANELSILCDIDIILLMFSPTGK 53
                 689****************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    
MGRVKLKIKR LENTNGRQAT YAKRKNGIMK KANELSILCD IDIILLMFSP TGKPSLCCGK  60
RSSIEDVIAK FAQLTPQERA KRKLESLEAL KKTFKKLDHD VNIQEFLGTS SQTIEDLSNQ  120
SSLLQTQLSE IKKRLSCWTS PDKINSVEQL GHMEDSLRES LNQIRIHKEN LQKQQLMSIK  180
CTSQFQNGLH IPFSMNAEQQ LQPLSWIPTN ESRHIVLPED TTLLPHRDLE CSASSSFGSY  240
SGYLGTGKSP EISTSGQENG ILNDLTRTAP LNLQLGGHIP YLPYNLNMLT DTKFQPPAEM  300
SPQENPVEYQ VNGSFEAPRP EFYPTQHNWA STSGPCAVTM FDEHLYSQQT N
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03060.26e-93M-type_MADS family protein