PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP003389.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

MYB

Protein Properties

Length: 569aa MW: 62090.3 Da PI: 7.3803

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP003389.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	50.5	4.7e-16	75	121	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT++Ede l +av+ + g++Wk+Ia+ ++ R++ qc +rwqk+l PCP003389.1 75 KGGWTPQEDETLRNAVAAFNGKSWKKIAEFFP-DRSEVQCLHRWQKVL 121 688***************************.**********986 PP
2	Myb_DNA-binding	62.7	7.2e-20	127	173	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++++++v+++G+ W++Ia+ ++ gR +kqc++rw+++l PCP003389.1 127 KGPWTQEEDDKIIELVAKYGPTKWSLIAKSLP-GRIGKQCRERWHNHL 173 79****************************.***********97 PP
3	Myb_DNA-binding	55.5	1.3e-17	179	222	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 + +WT eE++ l +a++++G++ W+ Ia+ ++ gRt++ +k++w++ PCP003389.1 179 KEAWTLEEELALMKAHQMHGNK-WAEIAKVLP-GRTDNAIKNHWNS 222 579*****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 569 aa Download sequence
MSSISIPATS SQAEEEMAGA KLEECCLENK QSMATSSSSV SEGSGSAIIK STGACSPASA 60 SPTQRRTSGP IRRAKGGWTP QEDETLRNAV AAFNGKSWKK IAEFFPDRSE VQCLHRWQKV 120 LNPELVKGPW TQEEDDKIIE LVAKYGPTKW SLIAKSLPGR IGKQCRERWH NHLNPDIKKE 180 AWTLEEELAL MKAHQMHGNK WAEIAKVLPG RTDNAIKNHW NSSLKKKLDS YLTTGTLPPP 240 PKCGAKEPRS NATKKILVCS TKGSDSTAQT SSGNADMSKL DEDGKDQFES AAPPQDMGAS 300 LSVHPNEFAD SEGDNLRLSF MDLSCSNSDS GPKYDNFGVK RKPQIESSVS NGRAESENCG 360 FNNQMDEDKV KTTSFPFETP SYGSLYYEPP PLESSVQFNS GFSSMHRLQN DYTSSPNLSP 420 ISFFTPPCVK GSGLCNQSPE SILKIAAKTF PNTPSILRKR KTIGQGQSPR NKVAIVDCES 480 VREMLNVSSE HKNSAEVSGS QDGSLCESPT SNGISTIGPN GKAFNASPPY RLRARRTAVF 540 KSVEKQLEFT CDEEYDANSM SVELSANGS

Sequence ? help Back to Top

Protein Sequence Length: 569 aa Download sequence

MSSISIPATS SQAEEEMAGA KLEECCLENK QSMATSSSSV SEGSGSAIIK STGACSPASA  60
SPTQRRTSGP IRRAKGGWTP QEDETLRNAV AAFNGKSWKK IAEFFPDRSE VQCLHRWQKV  120
LNPELVKGPW TQEEDDKIIE LVAKYGPTKW SLIAKSLPGR IGKQCRERWH NHLNPDIKKE  180
AWTLEEELAL MKAHQMHGNK WAEIAKVLPG RTDNAIKNHW NSSLKKKLDS YLTTGTLPPP  240
PKCGAKEPRS NATKKILVCS TKGSDSTAQT SSGNADMSKL DEDGKDQFES AAPPQDMGAS  300
LSVHPNEFAD SEGDNLRLSF MDLSCSNSDS GPKYDNFGVK RKPQIESSVS NGRAESENCG  360
FNNQMDEDKV KTTSFPFETP SYGSLYYEPP PLESSVQFNS GFSSMHRLQN DYTSSPNLSP  420
ISFFTPPCVK GSGLCNQSPE SILKIAAKTF PNTPSILRKR KTIGQGQSPR NKVAIVDCES  480
VREMLNVSSE HKNSAEVSGS QDGSLCESPT SNGISTIGPN GKAFNASPPY RLRARRTAVF  540
KSVEKQLEFT CDEEYDANSM SVELSANGS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G02320.2	1e-161	MYB family protein