PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP003394.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

MYB

Protein Properties

Length: 354aa MW: 40369.8 Da PI: 9.9763

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP003394.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	50.3	5.7e-16	4	53	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwqkyl 48 r+rW++eEd ll +vkq+G++ W++++++m+ + R +k+c +rw +yl PCP003394.1 4 RQRWSAEEDALLSAYVKQYGPREWNLVSQRMNtpLDRDAKSCLERWKNYL 53 89**********************************************97 PP
2	Myb_DNA-binding	38	3.9e-12	59	103	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+ T+eE+ l +++ +++G++ Wk+Ia++++ gRt+k + +w + PCP003394.1 59 KGSLTEEEQRLVICLQAKHGNK-WKKIAAEVP-GRTAKRLGKWWEVF 103 6788****************.*****.***999999766 PP

Sequence ? help Back to Top
Protein Sequence Length: 354 aa Download sequence
MKERQRWSAE EDALLSAYVK QYGPREWNLV SQRMNTPLDR DAKSCLERWK NYLKPGIKKG 60 SLTEEEQRLV ICLQAKHGNK WKKIAAEVPG RTAKRLGKWW EVFKEKQQRE QKNNKTADPI 120 VEGKYDRILE TFAEKLVKER AAPTYLMATS NGAYLHTETS SPAPTILPPW LSNSNVSSNV 180 RPPSPSVTLS LSSAVAPSPP IPWLQQDRGS DSSFALGNLP HHGVVPASGE NLVISELVEC 240 SRELEEVHRA WAAHKKEASW RLRRVELQLD SEKASRRREK MEEIEAKVKA LREEQNAALD 300 RIEAEYREQL AGLRRDAEAK EQKLAEQWAA KHSRLSKFLE QMGGRPKIAE PNGR

Sequence ? help Back to Top

Protein Sequence Length: 354 aa Download sequence

MKERQRWSAE EDALLSAYVK QYGPREWNLV SQRMNTPLDR DAKSCLERWK NYLKPGIKKG  60
SLTEEEQRLV ICLQAKHGNK WKKIAAEVPG RTAKRLGKWW EVFKEKQQRE QKNNKTADPI  120
VEGKYDRILE TFAEKLVKER AAPTYLMATS NGAYLHTETS SPAPTILPPW LSNSNVSSNV  180
RPPSPSVTLS LSSAVAPSPP IPWLQQDRGS DSSFALGNLP HHGVVPASGE NLVISELVEC  240
SRELEEVHRA WAAHKKEASW RLRRVELQLD SEKASRRREK MEEIEAKVKA LREEQNAALD  300
RIEAEYREQL AGLRRDAEAK EQKLAEQWAA KHSRLSKFLE QMGGRPKIAE PNGR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37630.1	1e-140	MYB family protein