PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP003446.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

MYB

Protein Properties

Length: 238aa MW: 25937.9 Da PI: 9.288

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP003446.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	57	4.5e-18	34	79	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEd l ++v+++G+++W++I+r++ gR++k+c++rw + PCP003446.1 34 KGPWSAEEDRVLTRLVERYGPRNWSLISRYIK-GRSGKSCRLRWCNQ 79 79***************************9.*********985 PP
2	Myb_DNA-binding	49.9	7.1e-16	88	130	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++++ Ede ++ a +++G++ W+tIar ++ gRt++ +k++w++ PCP003446.1 88 SFSQAEDETILAAQARFGNR-WATIARLLP-GRTDNAVKNHWNST 130 699***************.*****.*********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 238 aa Download sequence
MEALNICSSS ASSSDTSSSE SSLPRNPNKP ERIKGPWSAE EDRVLTRLVE RYGPRNWSLI 60 SRYIKGRSGK SCRLRWCNQL SPSVQHRSFS QAEDETILAA QARFGNRWAT IARLLPGRTD 120 NAVKNHWNST LKRRVRGDQL TEVGSFLGAG GNVGSNEGMS TSSVSGSLVN GSMEFDPLTE 180 LTLAPPGIGS ASGGAMVAEQ RRNNESVPAG FWDAMRDVIA REVRDYVTTT FSEPSGLL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37260.1	1e-60	MYB family protein