PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP003607.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

E2F/DP

Protein Properties

Length: 1398aa MW: 156791 Da PI: 6.5391

Description

E2F/DP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP003607.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	E2F_TDP	84.6	8e-27	102	185	2	71
E2F_TDP 2 keksLrlltqkflklleksee.givtlnevakeLvse.................dvknkrRRiYDilNVLealnliekkekneirwkg 71 ++++Lr++++k ++ek+e+ g++t+neva+eLv+e d+kn+rRR+YD+lNVL+a+++i+k +k+ei+wkg PCP003607.1 102 NGRGLRQFSMK---VCEKVESkGRTTYNEVADELVAEfadpsnavtspdqqqqdDEKNIRRRVYDALNVLMAMDIISK-DKKEIQWKG 185 789******...*999****************************************************.*****98 PP

Sequence ? help Back to Top
Protein Sequence Length: 1398 aa Download sequence
MGTRSQQQPG RERVGQEDDD MAGGQSVSMS GSVGSPSSRS EQTMATPAGD NSFLRLNHPD 60 VHGDDAGSQG AVGSVTSLPP FYFCFSSKKK KRGQRAVAGD KNGRGLRQFS MKVCEKVESK 120 GRTTYNEVAD ELVAEFADPS NAVTSPDQQQ QDDEKNIRRR VYDALNVLMA MDIISKDKKE 180 IQWKGLPRTS LNDIEELKTE RMGLRNRIEK KAAYLQELEE QDVLNHVDQC LHTLTSYLFY 240 QYVGLQNLIQ RNEELYHTGD APSGGVALPF ILVQASFLLK TRPHATVEVE ISEDMQLVHF 300 DFNSTPFELH DDNYVLKAMN FCNRQQSDDA TQNLTSRVAA VVFVVASFPA EKEMESLTTY 360 SSSLLCTCPL LSSHCSQSNT TAFKIPSTST KPKTTFTNIV VQSSVSPDPW SLSDGNNPDR 420 PKPRSKNPKK PLSDDNARRI IKAKANYLSA LRRNQGPQAQ TPKWIKRTPE QMVSYLHDDR 480 NGHLYGRHVV AAIKHVRALS EKSEGKYDMR AAMASFVGKL SFREMCVVLK EQKSWRQVRD 540 LFSWMKLQLS YRPSVIVYTL VLRAYGQVGK IKLAEQTFLE MLESGCEPDE VACGTMLCTY 600 ARWGRHKAML AFYSAVQERG ILLSVAVYNF MLSSLQKKSL HGMVIEMWRQ MVDIEVVPNK 660 FTYTVVIGSL VKEGLHEEAL KNFIELKNAG IVPEEATYSL LISLSTKHGK FDEALRLYED 720 MRSLGIVPSN YTCASLLTLY YKKEDYSKAL SLFSEMERKK IAADEVIYGL LIRIYGKLGL 780 YEDAQTAFEE MEQLGLLSDQ KTYLAMTQVH LNSGNCDKAL EVMELMKSRK NIWLSRFAYI 840 VLLQCYVMKE DLSSAEVTFQ ALSKTGLPDA GSCNDMLNLY IKLDLLEKAK DFITQIRRDR 900 VDFDEELCRT VVRVYCKEGM LRDAEQFVEE LGTSGLCQDS RFVQTISSVM CEHKEGKFVT 960 FDQPDTMALG LVLGLYLTDG DISDAFKAET HINQLAKLGC RVDDATVASL ISLYGKKRKL 1020 TKALEIFTAF ADSPSAKKLL CNSMLDAYAK CGKPQEAYAL YKQLTEEGHD LDAVAISIVV 1080 NALTNSGKHR EAENVIRESL EHHLELDTVA YNTFIKAMLE AGRLHFASSI YERMLSEGVA 1140 PSLRTYSTMI SVYGRGRKLE KAVEMLTTAR NSGLSLDEKA YMNLVSYYGK AGKRHEASML 1200 FSKMREEGIQ PGMVSYNIMI NVYAAGGLYQ EAEELFKAMQ QDGCLPDSFT YLSLIRAYTE 1260 SLNYSEAEET INSMHENGVH PSCAHFNLLL SAFAKMGLIG EAERIYGELH GAGLNPDVAC 1320 YQTMLRGYMD YGHLEEGIKL FEQISKSGEA DRFILSAAVH CYKSVGKELE AENVLHSMSN 1380 LGISFLENLE VGSKLKAS

Sequence ? help Back to Top

Protein Sequence Length: 1398 aa Download sequence

MGTRSQQQPG RERVGQEDDD MAGGQSVSMS GSVGSPSSRS EQTMATPAGD NSFLRLNHPD  60
VHGDDAGSQG AVGSVTSLPP FYFCFSSKKK KRGQRAVAGD KNGRGLRQFS MKVCEKVESK  120
GRTTYNEVAD ELVAEFADPS NAVTSPDQQQ QDDEKNIRRR VYDALNVLMA MDIISKDKKE  180
IQWKGLPRTS LNDIEELKTE RMGLRNRIEK KAAYLQELEE QDVLNHVDQC LHTLTSYLFY  240
QYVGLQNLIQ RNEELYHTGD APSGGVALPF ILVQASFLLK TRPHATVEVE ISEDMQLVHF  300
DFNSTPFELH DDNYVLKAMN FCNRQQSDDA TQNLTSRVAA VVFVVASFPA EKEMESLTTY  360
SSSLLCTCPL LSSHCSQSNT TAFKIPSTST KPKTTFTNIV VQSSVSPDPW SLSDGNNPDR  420
PKPRSKNPKK PLSDDNARRI IKAKANYLSA LRRNQGPQAQ TPKWIKRTPE QMVSYLHDDR  480
NGHLYGRHVV AAIKHVRALS EKSEGKYDMR AAMASFVGKL SFREMCVVLK EQKSWRQVRD  540
LFSWMKLQLS YRPSVIVYTL VLRAYGQVGK IKLAEQTFLE MLESGCEPDE VACGTMLCTY  600
ARWGRHKAML AFYSAVQERG ILLSVAVYNF MLSSLQKKSL HGMVIEMWRQ MVDIEVVPNK  660
FTYTVVIGSL VKEGLHEEAL KNFIELKNAG IVPEEATYSL LISLSTKHGK FDEALRLYED  720
MRSLGIVPSN YTCASLLTLY YKKEDYSKAL SLFSEMERKK IAADEVIYGL LIRIYGKLGL  780
YEDAQTAFEE MEQLGLLSDQ KTYLAMTQVH LNSGNCDKAL EVMELMKSRK NIWLSRFAYI  840
VLLQCYVMKE DLSSAEVTFQ ALSKTGLPDA GSCNDMLNLY IKLDLLEKAK DFITQIRRDR  900
VDFDEELCRT VVRVYCKEGM LRDAEQFVEE LGTSGLCQDS RFVQTISSVM CEHKEGKFVT  960
FDQPDTMALG LVLGLYLTDG DISDAFKAET HINQLAKLGC RVDDATVASL ISLYGKKRKL  1020
TKALEIFTAF ADSPSAKKLL CNSMLDAYAK CGKPQEAYAL YKQLTEEGHD LDAVAISIVV  1080
NALTNSGKHR EAENVIRESL EHHLELDTVA YNTFIKAMLE AGRLHFASSI YERMLSEGVA  1140
PSLRTYSTMI SVYGRGRKLE KAVEMLTTAR NSGLSLDEKA YMNLVSYYGK AGKRHEASML  1200
FSKMREEGIQ PGMVSYNIMI NVYAAGGLYQ EAEELFKAMQ QDGCLPDSFT YLSLIRAYTE  1260
SLNYSEAEET INSMHENGVH PSCAHFNLLL SAFAKMGLIG EAERIYGELH GAGLNPDVAC  1320
YQTMLRGYMD YGHLEEGIKL FEQISKSGEA DRFILSAAVH CYKSVGKELE AENVLHSMSN  1380
LGISFLENLE VGSKLKAS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03415.1	1e-125	E2F/DP family protein