PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP003675.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

bHLH

Protein Properties

Length: 1210aa MW: 136442 Da PI: 8.7098

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP003675.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	26.4	1.2e-08	155	203	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR +iN+++ L+ ++P + ++k + a +L + ++Y++sLq PCP003675.1 155 SHSLAERVRRGKINERLRCLQNIVPGC---SNKTMGMAVMLDEIINYVQSLQ 203 8************************...9999***************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 1210 aa Download sequence
MSEFTEDFQS IKPSFPFLDI DPNMELVNQF ADQFNIPSVM EYPSLNFHTY MPFSNDSYLF 60 SNQEPEFPAG NMVENFPKLE VHQIVADGNE SKKRIAVDDA SQSSSGISTP PVSETGITRK 120 NSAGRGKRVK SNEKEDEKPK EVVHVRARRG QATDSHSLAE RVRRGKINER LRCLQNIVPG 180 CSNKTMGMAV MLDEIINYVQ SLQNQIEFLS MRLAAASSFY DFNTSTDVTE TMQIAAELER 240 LKREAAGYGG VACLALYLFS SSFDHGCAYE KWETTALPGC TNDDFCLALM AATSNSHVAV 300 AAYLLPQLPH DFHANKSIGI LKPLSCSHCL PLYRECVKAQ GSRLVSLRLR GRLVEAVRRL 360 GAGVFDGVSQ ALLFWSIVFL KDHSTSKLRM KERRGKREDV EIGDGRERGK ERKKARKMWE 420 GWGKDGGRWG KRKKQRVEKE KKEGRMARMR FWFGACNLGW VLRNVAEIWR ISFAKAEIAE 480 KAAVFLNVHF VVEKCNIVKS GSSVKFKNCD IYEGSFKWLL GNRSPYDEEL EELERSPSAR 540 TNWVPELSPI ANIVVRRCSK ILGVPTTELR EGFNSEASES IKHPSCYARN FLEYCCFRAL 600 ALSTQVTGHL ADKKFRRLTY DMMIAWEAPA AASQPLLNLD EDLSVGVEAF SRIAPAVPII 660 ANVITSENIF KVLASSSDGR LQFFTYDKYL SGLERAIRKM RSQSESSLLS AMRSSKREKI 720 LEVDGTVTTQ PVLEHVGIST WPGRLILTDH ALYFEALRVV SYDKAKQYDL SDDLKQVVKP 780 ELTGPWGTRL FDKAVFYKSV SLSEPAIIEF PELKGHTRRD YWLAIIREIL YVHRFINKYQ 840 IKGIKKDEAL SKAVLGILRL QAIKEISSQT DLRYEGLLMF NLCDQLPGGD LILETMADMS 900 TFKEFDRSSK SKLGGGMYSI SALDMISNLG FSFGTSSSSP VEAGLAVGEI TVGEVTLLEK 960 AVKESKNNYE KVALAQATVD GVKVEGIDTN FAVMKELLFP MMELWTCLLS LALWEDPLKS 1020 LLFCCVFTYI ICRVSFHTTP VGFLSRLTQA ALFRGWLSYA FALTLIFIAV FMVLTRYFSE 1080 GKSTHEVKVL APPAMNTMEQ LLAVQNAISQ AEGIIQDGNV VLLKLRALLL SLFPQASERF 1140 AIALVVMALA LAFLPVKYIV LYIFLETFTC YSPVRRSSTE RWTRRLREWW FSIPAAPVIL 1200 EREKEEKKKK

Sequence ? help Back to Top

Protein Sequence Length: 1210 aa Download sequence

MSEFTEDFQS IKPSFPFLDI DPNMELVNQF ADQFNIPSVM EYPSLNFHTY MPFSNDSYLF  60
SNQEPEFPAG NMVENFPKLE VHQIVADGNE SKKRIAVDDA SQSSSGISTP PVSETGITRK  120
NSAGRGKRVK SNEKEDEKPK EVVHVRARRG QATDSHSLAE RVRRGKINER LRCLQNIVPG  180
CSNKTMGMAV MLDEIINYVQ SLQNQIEFLS MRLAAASSFY DFNTSTDVTE TMQIAAELER  240
LKREAAGYGG VACLALYLFS SSFDHGCAYE KWETTALPGC TNDDFCLALM AATSNSHVAV  300
AAYLLPQLPH DFHANKSIGI LKPLSCSHCL PLYRECVKAQ GSRLVSLRLR GRLVEAVRRL  360
GAGVFDGVSQ ALLFWSIVFL KDHSTSKLRM KERRGKREDV EIGDGRERGK ERKKARKMWE  420
GWGKDGGRWG KRKKQRVEKE KKEGRMARMR FWFGACNLGW VLRNVAEIWR ISFAKAEIAE  480
KAAVFLNVHF VVEKCNIVKS GSSVKFKNCD IYEGSFKWLL GNRSPYDEEL EELERSPSAR  540
TNWVPELSPI ANIVVRRCSK ILGVPTTELR EGFNSEASES IKHPSCYARN FLEYCCFRAL  600
ALSTQVTGHL ADKKFRRLTY DMMIAWEAPA AASQPLLNLD EDLSVGVEAF SRIAPAVPII  660
ANVITSENIF KVLASSSDGR LQFFTYDKYL SGLERAIRKM RSQSESSLLS AMRSSKREKI  720
LEVDGTVTTQ PVLEHVGIST WPGRLILTDH ALYFEALRVV SYDKAKQYDL SDDLKQVVKP  780
ELTGPWGTRL FDKAVFYKSV SLSEPAIIEF PELKGHTRRD YWLAIIREIL YVHRFINKYQ  840
IKGIKKDEAL SKAVLGILRL QAIKEISSQT DLRYEGLLMF NLCDQLPGGD LILETMADMS  900
TFKEFDRSSK SKLGGGMYSI SALDMISNLG FSFGTSSSSP VEAGLAVGEI TVGEVTLLEK  960
AVKESKNNYE KVALAQATVD GVKVEGIDTN FAVMKELLFP MMELWTCLLS LALWEDPLKS  1020
LLFCCVFTYI ICRVSFHTTP VGFLSRLTQA ALFRGWLSYA FALTLIFIAV FMVLTRYFSE  1080
GKSTHEVKVL APPAMNTMEQ LLAVQNAISQ AEGIIQDGNV VLLKLRALLL SLFPQASERF  1140
AIALVVMALA LAFLPVKYIV LYIFLETFTC YSPVRRSSTE RWTRRLREWW FSIPAAPVIL  1200
EREKEEKKKK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	412	434	RKKARKMWEGWGKDGGRWGKRKK
2	431	442	KRKKQRVEKEKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G73830.1	2e-51	bHLH family protein