PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP003676.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

MYB

Protein Properties

Length: 510aa MW: 58128.2 Da PI: 9.607

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP003676.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	58.7	1.3e-18	22	69	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT eEd ll+++++++G g+W++ a++ g++Rt+k+c++rw++yl PCP003676.1 22 RGPWTLEEDSLLIQYIARHGEGRWNLLAKRSGLRRTGKSCRLRWLNYL 69 89********************************************97 PP
2	Myb_DNA-binding	51.6	2.1e-16	75	118	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ ++eE++l++d++ ++G++ W++Ia++++ gRt++++k++w++ PCP003676.1 75 RGNLSPEEQLLILDLHSKMGNK-WSKIAQYLP-GRTDNEIKNYWRT 118 7899****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 510 aa Download sequence
MSTKTKTLSS SSSGEDDGEL RRGPWTLEED SLLIQYIARH GEGRWNLLAK RSGLRRTGKS 60 CRLRWLNYLK PDVKRGNLSP EEQLLILDLH SKMGNKWSKI AQYLPGRTDN EIKNYWRTRV 120 QKQARHLRID TSSVEFQNMI RCFWMPRLQQ KIGGGTSISS AVLNQNHAIS QPLEDNTFPH 180 FTATISPTPQ NIVQEEINMS ASMYNLDVEK QNIKAEYCTG PYIFPSEPMD MSKTVQFPEC 240 PPFHCGDNNG YDTESFNLQE TVSADSAPNF PGNSAGDCYV AETNWVFSIP AEARALGFSV 300 TQKQKSLRLS ILLESDFAKM YTSRKKISKD NNAEPTEFEE SVAQAVFDLE NTNQELKSDL 360 KDLYINSAIQ VDVSGSKKAV VIHVPYRLRK AYRKIHVRLV RELEKKFSGK DVILIATRRI 420 VRPPKKGSAA QRPRTRTLTA VHEAMLEDVV LPAEIIGKRI RYRLDGSKIM KVFLDPKERN 480 NTEYKLESFS AVYRKLSGKD VVFEYPITEA

Sequence ? help Back to Top

Protein Sequence Length: 510 aa Download sequence

MSTKTKTLSS SSSGEDDGEL RRGPWTLEED SLLIQYIARH GEGRWNLLAK RSGLRRTGKS  60
CRLRWLNYLK PDVKRGNLSP EEQLLILDLH SKMGNKWSKI AQYLPGRTDN EIKNYWRTRV  120
QKQARHLRID TSSVEFQNMI RCFWMPRLQQ KIGGGTSISS AVLNQNHAIS QPLEDNTFPH  180
FTATISPTPQ NIVQEEINMS ASMYNLDVEK QNIKAEYCTG PYIFPSEPMD MSKTVQFPEC  240
PPFHCGDNNG YDTESFNLQE TVSADSAPNF PGNSAGDCYV AETNWVFSIP AEARALGFSV  300
TQKQKSLRLS ILLESDFAKM YTSRKKISKD NNAEPTEFEE SVAQAVFDLE NTNQELKSDL  360
KDLYINSAIQ VDVSGSKKAV VIHVPYRLRK AYRKIHVRLV RELEKKFSGK DVILIATRRI  420
VRPPKKGSAA QRPRTRTLTA VHEAMLEDVV LPAEIIGKRI RYRLDGSKIM KVFLDPKERN  480
NTEYKLESFS AVYRKLSGKD VVFEYPITEA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25340.1	2e-70	MYB family protein