PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP003777.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family Trihelix
Protein Properties Length: 247aa    MW: 27945.8 Da    PI: 9.7368
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP003777.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix45.12.6e-1416100186
     trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm...rergfe..rspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                  +W+++ +laLi+a  ++  +l+rg l++++W+ev++++   + +g +  ++ +qCk++++ l+k+yk +k   ++      st+p++++l+
  PCP003777.1  16 CWSEDATLALITAWGDRYLHLNRGILRQKDWKEVADAVnshQNGGAKpfKTDVQCKNRIDTLKKKYKLEKSKPGQ------STWPFYRRLH 100
                  7*************************************88733444322699****************9999887......58*****997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    
MDRLTRTHAP AGREDCWSED ATLALITAWG DRYLHLNRGI LRQKDWKEVA DAVNSHQNGG  60
AKPFKTDVQC KNRIDTLKKK YKLEKSKPGQ STWPFYRRLH SIICSTPSNT AGATKSNPRI  120
LALSAKSPDP NTNLLGGSTD SSIRHDDGDD EAAVFEGGAA CRELARAISK FGEMYERIEN  180
SKRKQMMELE KQRMEFDKEL ALQRLSMFMD VQVELGKKMK HSKYSHSSGA AIVQNFNFNL  240
NLFMGFI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11100.13e-55Trihelix family protein