PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP004033.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family M-type_MADS
Protein Properties Length: 255aa    MW: 29140.4 Da    PI: 10.0123
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP004033.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF58.67.6e-191150342
                 --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
       SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                 i+n+s r+ tf kRr+g++KK +ELS+LCd++++ ii+s+
  PCP004033.1 11 ISNDSARKATFKKRRKGLMKKVSELSTLCDVQACAIIYSP 50
                 9**************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    
MTRTKVKLTY ISNDSARKAT FKKRRKGLMK KVSELSTLCD VQACAIIYSP YDSQPELWPS  60
PLGVQRVLAQ FKTMPEMEQS KKMVNQESFL RQRIAKANEQ LKKQRKDNRE KEMTRVMFQS  120
LMGKSQLHGL GMVDLNDLGW LIDQNLKEID NRMKNLNEQD SKSQVQLQPT ALPVAAATAA  180
ERGVERQQGF ELNNNVGTAV QRQQQPFFMD MMNVPQDHQQ QQMAGIGGGY EMNMLPFAAD  240
QSQINAIWSN SSFYP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12226KKRRK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.14e-68M-type_MADS family protein