PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP004039.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family LFY
Protein Properties Length: 248aa    MW: 27676.3 Da    PI: 8.7256
Description LFY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP004039.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FLO_LFY367.91.7e-1125224148363
      FLO_LFY 148 glseepvqeekeaagsggeglgeaelvaaeekkseeekkkaskkkqkr...kkkkelkseededeeeeededeegsgedge...erqrehPfivtepg 239
                  glseepvq+eke++gsg ++  ++e+v+a e++++++++k+ + ++      +++++++  d+++++ +d +++g+g +g    erqrehPfivtepg
  PCP004039.1   5 GLSEEPVQQEKEMVGSGVGM--AWEVVTAGERRKKQRRMKKGQYRNCSaggGHNNDHNKGVDDKDDDMDDMNGQGNGGGGGllgERQREHPFIVTEPG 100
                  89**************9888..99999998755555544443333322000233333333666666666666666666555667************** PP

      FLO_LFY 240 evargkknGLDYLfdLyeqCrefLlqvqkiakerGekcPtkvtnqvfryakkagasyinkPkmrhYvhCYalhcLdeeasnalrrafkergenvGawr 337
                  evargkknGLDYLf+LyeqCr+fL+qvq+iakerGekcPtkvtnqvfryakk+gasyinkPkmrhYvhCYalhcLd easn lrrafke genvG+wr
  PCP004039.1 101 EVARGKKNGLDYLFHLYEQCRDFLIQVQNIAKERGEKCPTKVTNQVFRYAKKSGASYINKPKMRHYVHCYALHCLDVEASNVLRRAFKETGENVGSWR 198
                  ************************************************************************************************** PP

      FLO_LFY 338 qacykplvaiaarqgwdidavfnahp 363
                  qacykplv iaa qgwdida+fn+hp
  PCP004039.1 199 QACYKPLVVIAAGQGWDIDAIFNSHP 224
                  *************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    
MGCVGLSEEP VQQEKEMVGS GVGMAWEVVT AGERRKKQRR MKKGQYRNCS AGGGHNNDHN  60
KGVDDKDDDM DDMNGQGNGG GGGLLGERQR EHPFIVTEPG EVARGKKNGL DYLFHLYEQC  120
RDFLIQVQNI AKERGEKCPT KVTNQVFRYA KKSGASYINK PKMRHYVHCY ALHCLDVEAS  180
NVLRRAFKET GENVGSWRQA CYKPLVVIAA GQGWDIDAIF NSHPPSLHLV RSHEAPSALS  240
CRAPQHRL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61850.12e-91LFY family protein