PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP004171.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family C2H2
Protein Properties Length: 122aa    MW: 14158.3 Da    PI: 8.8761
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP004171.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.32.7e-054567123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 + C+ Cgk F  k + ++H +++
  PCP004171.1 45 FMCKRCGKAFAVKGDWRTHEKNC 67
                 89*****************9987 PP
2zf-C2H211.10.00137490521
                 TTTEEESSHHHHHHHHH CS
      zf-C2H2  5 dCgksFsrksnLkrHir 21
                 +Cg  F++k +Lk Hi+
  PCP004171.1 74 ICGSDFKQKRSLKDHIK 90
                 8**************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 122 aa     Download sequence    
MLRLRCYCCA PGCKHNIDNP RGAKPLKDFR TLQVHYKRKH GVRSFMCKRC GKAFAVKGDW  60
RTHEKNCGKI WYCICGSDFK QKRSLKDHIK ALGRGHGLFD IECFEEEEEP ASEIEHDAEA  120
SR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.12e-58C2H2 family protein