PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP004180.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family C2H2
Protein Properties Length: 246aa    MW: 26281.1 Da    PI: 8.8229
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP004180.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.50.0004495117123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  ykC+ C+k Fs+   L  H  +H
  PCP004180.1  95 YKCSVCNKGFSSYQALGGHKASH 117
                  9***********99999998887 PP
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    
MALEALKSAS TTTNTSPPFS SFEEAEDRRQ ANHQIHSKEP WAKRKRSKRP RSEDPPTEEE  60
YLALCLIMLA RGTTAAATTS SSESPAQPPS RELSYKCSVC NKGFSSYQAL GGHKASHRKS  120
DSSAAAAATV DHPIAAASAG PTTSARTHEC SICHKTFPTG QALGGHKRCH YDGGIAVTTS  180
EGGGAGASSH SQSQSHQSQR GFDLNLPALP EFWPGFGADK KSQLSGEQEV QSPMVAKKPR  240
WLFGRD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27730.14e-44C2H2 family protein