PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP004217.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

SRS

Protein Properties

Length: 219aa MW: 24144.8 Da PI: 9.1003

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP004217.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	189.7	1.1e-58	3	145	6	153
DUF702 6 asCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrer.qqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaeskkelet 102 ++CqdCGnqakk+Ca+ RCRtCCks+gf+C+thvkstWvp+++r + +qql + ++ a+ ++ ++ ++r+ a+ + ++ ++s + ++ PCP004217.1 3 SRCQDCGNQAKKECAYFRCRTCCKSKGFHCQTHVKSTWVPVYRRHHThHQQLPSIDPQHPAHLHQGHNYNPRRP------AAGHVITNPSSSGQDQQV 94 68***************************************9987356666666666666676666666654......333333444456677889 PP DUF702 103 sslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153 +++P++v+s+a frcvrvssv+d ++ aYqt+v igGhvfkGiLydqG++ PCP004217.1 95 NNFPADVNSMATFRCVRVSSVEDTVNQHAYQTSVVIGGHVFKGILYDQGPN 145 99*********************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 219 aa Download sequence
MGSRCQDCGN QAKKECAYFR CRTCCKSKGF HCQTHVKSTW VPVYRRHHTH HQQLPSIDPQ 60 HPAHLHQGHN YNPRRPAAGH VITNPSSSGQ DQQVNNFPAD VNSMATFRCV RVSSVEDTVN 120 QHAYQTSVVI GGHVFKGILY DQGPNYTTAA GQSSSSQHVM NKQTSNFISA AASASNITAS 180 TSSAAADHQV PYHHQLPSSY PLIPFNAFMP GTQFFLNPK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G21400.1	1e-48	SRS family protein