PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP004462.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

MYB_related

Protein Properties

Length: 714aa MW: 79074.7 Da PI: 10.5259

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP004462.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	30.5	8.7e-10	10	58	2	42
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT........TTS-HHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmg........kgRtlkqcks 42 ++W t E++llv av+++G+ +W+++a ++g + +t+ +c++ PCP004462.1 10 QPWGTLEELLLVSAVNRHGTQSWDSVALEVGgrcsakatTLLTALNCRD 58 89*****************************555555555555555555 PP

Sequence ? help Back to Top
Protein Sequence Length: 714 aa Download sequence
MAGEHGTRTQ PWGTLEELLL VSAVNRHGTQ SWDSVALEVG GRCSAKATTL LTALNCRDKF 60 EDIKRRFVLG DDDDSSGSLG AMVDKLRRLR VEELRREVRR RDVSIVSLEL KVKRLEEERD 120 RSLKEDAEAT SPSKDLKRGG EDQRDGSPEN LAGKMNSGED FGWDFNSDER ENRSFNESNS 180 TSQRGAAEKQ AEGKEEEPGP EGNEPDPMRA KIRSEPDRDC SVNGKVADDD DEDNQNNKNG 240 DDTAKASQLD DSSEFWESGG ESKREGKRGR RGGAAASRQQ NSDVQSSASL SKRKPRRGGG 300 GEGGGGGSRS RSRSRSSSGE EAEGDEVSPA TSKGVKQLKL VKSEPLIKVL KIIRSHRLGS 360 VFERRLRSQE SERYKSLIRQ HMDLRMIQSK LNKGVYAEDC IRLFFRDLLL LFNNAVVFFR 420 KNSPEHNAAQ ELRSIVLKEM NDQLPKPQSA TETEKSNVPK IETKAQKLES HGSEKPIKSS 480 IVVCGKLGSV NALSDAKNRK GDKIEEKAKA ANVRKADGAA FVKVEDKGVR KRRTQERGGR 540 RGMSTRGRNA AKPTKRHEYG VNELSSHDGL DALKAEKEKK ENGRKKQGAA RFLKRMKQTS 600 STEVKKENSD GTEEDSEESE DEKKKKKKKP TRGRMKPEVE RKERVTRSST ESGGGRGGGR 660 RSQESNGRGR RGVGRPPKRP ETSAAGAGSG KRGRDNGEAD QVGSAGRPRK RTRR

Sequence ? help Back to Top

Protein Sequence Length: 714 aa Download sequence

MAGEHGTRTQ PWGTLEELLL VSAVNRHGTQ SWDSVALEVG GRCSAKATTL LTALNCRDKF  60
EDIKRRFVLG DDDDSSGSLG AMVDKLRRLR VEELRREVRR RDVSIVSLEL KVKRLEEERD  120
RSLKEDAEAT SPSKDLKRGG EDQRDGSPEN LAGKMNSGED FGWDFNSDER ENRSFNESNS  180
TSQRGAAEKQ AEGKEEEPGP EGNEPDPMRA KIRSEPDRDC SVNGKVADDD DEDNQNNKNG  240
DDTAKASQLD DSSEFWESGG ESKREGKRGR RGGAAASRQQ NSDVQSSASL SKRKPRRGGG  300
GEGGGGGSRS RSRSRSSSGE EAEGDEVSPA TSKGVKQLKL VKSEPLIKVL KIIRSHRLGS  360
VFERRLRSQE SERYKSLIRQ HMDLRMIQSK LNKGVYAEDC IRLFFRDLLL LFNNAVVFFR  420
KNSPEHNAAQ ELRSIVLKEM NDQLPKPQSA TETEKSNVPK IETKAQKLES HGSEKPIKSS  480
IVVCGKLGSV NALSDAKNRK GDKIEEKAKA ANVRKADGAA FVKVEDKGVR KRRTQERGGR  540
RGMSTRGRNA AKPTKRHEYG VNELSSHDGL DALKAEKEKK ENGRKKQGAA RFLKRMKQTS  600
STEVKKENSD GTEEDSEESE DEKKKKKKKP TRGRMKPEVE RKERVTRSST ESGGGRGGGR  660
RSQESNGRGR RGVGRPPKRP ETSAAGAGSG KRGRDNGEAD QVGSAGRPRK RTRR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	622	630	EKKKKKKKP
2	623	629	KKKKKKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60110.1	9e-23	MYB_related family protein