PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP004502.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

LBD

Protein Properties

Length: 258aa MW: 27865.5 Da PI: 8.2159

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP004502.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	130.3	8.5e-41	65	164	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +CaaCk+lrr+C+++C+++pyf ++p+kf +vhk+FGasnv+k+l ++ e++r da++slvyeA r+rdPv+G++gvil+l+qq+++l+ael++++ PCP004502.1 65 PCAACKLLRRRCTEECPFSPYFSPHEPQKFSAVHKVFGASNVSKMLMEVAENQRADAANSLVYEATLRLRDPVSGCMGVILALHQQVQSLQAELNAVR 162 7**********************************************************************************************999 PP DUF260 99 ee 100 +e PCP004502.1 163 TE 164 87 PP

Sequence ? help Back to Top
Protein Sequence Length: 258 aa Download sequence
MSTNREITTL DETGKKIRRE SDASVDDQMG IMSTTRISSS SSSSFGVPHQ GMMMMSTTTL 60 NTITPCAACK LLRRRCTEEC PFSPYFSPHE PQKFSAVHKV FGASNVSKML MEVAENQRAD 120 AANSLVYEAT LRLRDPVSGC MGVILALHQQ VQSLQAELNA VRTEILRYKY KEATSRSVVS 180 PRGIIHHSAL VSNSGMVSIA AQPQTISPPL PPPLPPASAP SSVVFSSSSS SSASTVYNPS 240 TNTTGYSSMS SENIPYFD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30340.1	9e-70	LBD family protein