PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP004581.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

LSD

Protein Properties

Length: 122aa MW: 13281.1 Da PI: 6.8648

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP004581.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	41.9	1.6e-13	33	57	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Cr lL YPrGA++V C++C+tV PCP004581.1 33 CGSCRRLLKYPRGARHVECSCCQTV 57 ************************9 PP
2	zf-LSD1	48	2e-15	71	95	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+C +lL+YP+GApsVRC++C++V PCP004581.1 71 CGSCAVLLMYPYGAPSVRCSSCHFV 95 ***********************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 122 aa Download sequence
MESKVEVDEA PQPELQSTAA QPSPPSEIAQ MVCGSCRRLL KYPRGARHVE CSCCQTVNFV 60 LEAHQVGQVK CGSCAVLLMY PYGAPSVRCS SCHFVTEVGE HNKRPPWSVQ QGQSPTPPNP 120 VD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G21610.1	4e-46	LSD family protein