PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP004628.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

AP2

Protein Properties

Length: 650aa MW: 71141 Da PI: 6.2029

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP004628.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	47.2	5.5e-15	374	425	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g PCP004628.1 374 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFTTQEEAAEAYDIAAIKFRG 425 57**************988532...5**********************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 650 aa Download sequence
MSDSFVLIMP PKDNLLAIFS LPILFETDLN FNIHNWAFKK CNSNIKIKLV PSKIEVEENK 60 VQMEGDINEL SLIGESDDGD HGSPIECGTQ GHSAKLYPHL SSSSFAPPMV NHTTARSSTS 120 FPWILDSGAF HYVTFDSRNI PDSTSYDGPD EIIIGNGKGT VADHHRQGAS PTSATDLSIF 180 SSGVNGSKLE DFLGGCTTFT TTVTPTSLPQ FSTADHHHQT APLALSENRI YDPELKTIAA 240 SFLRGIGGQE DMKRICGITV AEEKDKVGRA GKIVMWVVCF VRHVHDANDC SYGYALIIII 300 VNFTSAVYLG GYEKEEKAAR AYDLAALKYW GPTTTTNFPV TNYEKELWEM KNMTRQEFVA 360 SLRRKSSGFS RGASIYRGVT RHHQHGRWQA RIGRVAGNKD LYLGTFTTQE EAAEAYDIAA 420 IKFRGLNAVT NFDMSHYDVK SIANSNLPIG GMPGKSKNSS DSDSKSIEGN HSADDRDLSF 480 ASSVIFASQQ PRSSTLNFAI PLKQDSASDY WSNIFGNNLS LSNVKNPSTV LDAPISSLFQ 540 SCANGSYGNN SSPLPFNMDF SSTSRTSVSE TNNAYYGNFN VDGQQHQQQE QSTSAGTVTD 600 LIPFATTIAL NSNNGYETSS GYGTWTGPSL HTFHTHAKTN LFQTPIFGME

Sequence ? help Back to Top

Protein Sequence Length: 650 aa Download sequence

MSDSFVLIMP PKDNLLAIFS LPILFETDLN FNIHNWAFKK CNSNIKIKLV PSKIEVEENK  60
VQMEGDINEL SLIGESDDGD HGSPIECGTQ GHSAKLYPHL SSSSFAPPMV NHTTARSSTS  120
FPWILDSGAF HYVTFDSRNI PDSTSYDGPD EIIIGNGKGT VADHHRQGAS PTSATDLSIF  180
SSGVNGSKLE DFLGGCTTFT TTVTPTSLPQ FSTADHHHQT APLALSENRI YDPELKTIAA  240
SFLRGIGGQE DMKRICGITV AEEKDKVGRA GKIVMWVVCF VRHVHDANDC SYGYALIIII  300
VNFTSAVYLG GYEKEEKAAR AYDLAALKYW GPTTTTNFPV TNYEKELWEM KNMTRQEFVA  360
SLRRKSSGFS RGASIYRGVT RHHQHGRWQA RIGRVAGNKD LYLGTFTTQE EAAEAYDIAA  420
IKFRGLNAVT NFDMSHYDVK SIANSNLPIG GMPGKSKNSS DSDSKSIEGN HSADDRDLSF  480
ASSVIFASQQ PRSSTLNFAI PLKQDSASDY WSNIFGNNLS LSNVKNPSTV LDAPISSLFQ  540
SCANGSYGNN SSPLPFNMDF SSTSRTSVSE TNNAYYGNFN VDGQQHQQQE QSTSAGTVTD  600
LIPFATTIAL NSNNGYETSS GYGTWTGPSL HTFHTHAKTN LFQTPIFGME

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57390.1	3e-96	AP2 family protein