PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP004813.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family LBD
Protein Properties Length: 253aa    MW: 27205.4 Da    PI: 6.7728
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP004813.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260124.64.8e-39551561101
       DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 
                  +C aCk+lrrkC ++C++ap+f ++q +++fa+vhk+FGasnv+kll ++p ++r+da+ ++ yeA+ar++dPvyG+v++il+lqqq+++l+aela++
  PCP004813.1  55 PCGACKFLRRKCISGCIFAPHFGSDQgAARFAAVHKVFGASNVSKLLLHIPLNRRHDAVVTISYEAQARLSDPVYGCVSTILALQQQVASLQAELAMV 152
                  7***********************9989*********************************************************************9 PP

       DUF260  98 keel 101
                  +++l
  PCP004813.1 153 QTQL 156
                  9885 PP
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    
MADQPVQGDH DTSESRRKGT SSGGGGKRAS MEAAMGTRTI NSNAVGCGGG GGAAPCGACK  60
FLRRKCISGC IFAPHFGSDQ GAARFAAVHK VFGASNVSKL LLHIPLNRRH DAVVTISYEA  120
QARLSDPVYG CVSTILALQQ QVASLQAELA MVQTQLINSR FAFASALQIT SQQQQHEQQQ  180
QNMALMLQPA YSNNSSATTN LINMNSFTSN FDIEAAPSSQ SFMEPLQLSR PSRDDEDDEE  240
ESRVPLLFAN DRY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03760.13e-61LBD family protein