PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP004822.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family Trihelix
Protein Properties Length: 235aa    MW: 26422.8 Da    PI: 4.8355
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP004822.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix55.41.6e-172464287
     trihelix 42 gferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87
                 g++rs+k+Ckekwen+nk++kk+ke++kkr +e+ +tcpyf++l+a
  PCP004822.1  2 GYKRSSKRCKEKWENINKYFKKVKESNKKR-PEDAKTCPYFHELDA 46
                 9****************************8.99999********85 PP
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    
MGYKRSSKRC KEKWENINKY FKKVKESNKK RPEDAKTCPY FHELDALYRK RVLGGGSSGG  60
SSSSLGNRLE QQPQQQENPK SGSSTHPQPS AHTVSQTQGQ VVAAGSENKD ADHSTSVETN  120
LRANLFGEGK EEAAKKPEDI VKELMEVHDH HQQVFQGLPQ HLVVEDYNRM EEADSDNLMD  180
QEEEDMEDDD IDDEGDEETE QERKMAYKIE FQKQNTGRSS NGGGNGAPSF LAMVQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.14e-27Trihelix family protein