PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP004850.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family B3
Protein Properties Length: 227aa    MW: 25698 Da    PI: 6.5981
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP004850.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B348.91.2e-15119210999
                  HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
           B3   9 dvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                   + + + ++lp k + ++     k  s  +tl+  +gr+W+v+++  + ++ +  l+ GW eFv+ n+L++gD++v+ l+ +++  + v +fr+
  PCP004850.1 119 TYINGHSVWLPSKLCIHMrrL-GK-HSGAVTLRAFDGRTWSVEMKCeKATRPKLRLQYGWTEFVRGNNLEVGDVCVLVLIYDTKLVFEVVIFRT 210
                  445556799******888852.34.3448***************874444445*************************9988888888888886 PP
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    
MPEMEETDED DDSHNSSWDD DDDSDCVEVL DNIMSAQEKQ GTNLHCHVLD LIRSTEQVQP  60
AEFAYKRHGE VTSSTPKRAQ TVLGSMHASN ARGKAAVALR RATAFKSDNP YFIVPMKRTY  120
INGHSVWLPS KLCIHMRRLG KHSGAVTLRA FDGRTWSVEM KCEKATRPKL RLQYGWTEFV  180
RGNNLEVGDV CVLVLIYDTK LVFEVVIFRT TETAHTFSPP GTLSFNF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49480.19e-12B3 family protein