PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP004993.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

MYB

Protein Properties

Length: 327aa MW: 36818 Da PI: 6.9261

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP004993.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	51.4	2.4e-16	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+ Ed+ l +++k++G g+W+ +++ g++R++k+c++rw++yl PCP004993.1 14 RGAWTAHEDKVLTEYIKLHGEGRWRNLPKKAGLNRCGKSCRLRWLNYL 61 89********************************************97 PP
2	Myb_DNA-binding	54.5	2.7e-17	67	111	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+ T++E+el+++++k+lG++ W++Ia +++ gRt++++k++w++ PCP004993.1 67 RGNITPDEEELIIRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNTN 111 7999****************.*****.*********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 327 aa Download sequence
MGRSPCCAKE GMNRGAWTAH EDKVLTEYIK LHGEGRWRNL PKKAGLNRCG KSCRLRWLNY 60 LRPDIKRGNI TPDEEELIIR LHKLLGNRWS LIAGRLPGRT DNEIKNYWNT NLGKKVHDHQ 120 QGSASDLKHR KNGEPNSKKA KMMDMAAPSS HVVRTKAAKC TKVFINPHPH KVPLGHDHQH 180 CTEETNAGGL MFGDKPAAMD DDHINRTRSF SSFSNINADQ ENVTSDFLAD FDMDEISLAN 240 LLNSDFPEIN HDELNHNGSD NGMSHCVDET ARFFSEGMLQ HWKNGGSDDG DDQVQVQPNL 300 VLNFHSYNSF LGSDHQGEEC LGVGESR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G35550.1	6e-63	MYB family protein