PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP004994.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

MYB

Protein Properties

Length: 707aa MW: 79392.8 Da PI: 6.4374

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP004994.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	47.6	3.8e-15	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+W+++Ed++l ++++ G g W+ +++ g++R++k+c++rw++yl PCP004994.1 14 RGAWSAWEDKILTNYIETNGEGKWRDLPQRAGLNRCGKSCRLRWLNYL 61 89********************************************97 PP
2	Myb_DNA-binding	47.5	4.1e-15	67	111	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+ + eE++l+++++k+lG++ W++Ia +++ gRt++++k++w++ PCP004994.1 67 RGNISGEEEDLIIRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNTT 111 677788**************.*****.**********87 PP

Sequence ? help Back to Top
Protein Sequence Length: 707 aa Download sequence
MGRKPCCDKE GLNRGAWSAW EDKILTNYIE TNGEGKWRDL PQRAGLNRCG KSCRLRWLNY 60 LRPDIKRGNI SGEEEDLIIR LHKLLGNRWS LIAGRLPGRT DNEIKNYWNT TLSKKTEQGS 120 DKAPRPERTS TTNSNEYTPK PKPASKSHQT VQVIRTKAFK CRKVVIPSHL DDHDQMVDRL 180 NVNPGLVPCE CPSSSASQDP QEDSPPCGFL IDFNIDDLFI SDLLKTENFL QDQIDKCDQE 240 MEDGIIKLEG LMGEAMLENS TASVHDHHDD QIFQPKDDHD RVHGLNAISY FLNLEDDHEK 300 WSRNLVGRGS WLEHTAPRGV GTLVDYRAPA CQDAARGEQT QGNTETTDIR SDKEDADVLI 360 LQEAATEAER REARECGDIY ELFGDSEAEE EAEANTRTPR LVRTVLVETS DSELEKQPKP 420 KRATLTRKST RSQTSQSSKA VSALNTSNVV VSVTGRQKRT SSKVTNPQAS RADPIDVPEA 480 SEVFASHPQV SIEGSSTVSH SLVSHDSLSQ QSREVTPPQP PSKAPGLTQG SGEGSGKSPP 540 HIVCKRDLPR PFSVFGITGI SVPKHAQYKS FMSFFENLRA LRDQHQKAKW ASNRVKRFQE 600 KHVKSTAALW QLVEEGSVME ERIAVVDSEI QRLEKQLCSL KAEKVTLTNH LSQKVEHMEK 660 ISQEVVDPKT QFVNNNMYFG ESSQIFTIMQ TYFSKIVALA EDVKLLD

Sequence ? help Back to Top

Protein Sequence Length: 707 aa Download sequence

MGRKPCCDKE GLNRGAWSAW EDKILTNYIE TNGEGKWRDL PQRAGLNRCG KSCRLRWLNY  60
LRPDIKRGNI SGEEEDLIIR LHKLLGNRWS LIAGRLPGRT DNEIKNYWNT TLSKKTEQGS  120
DKAPRPERTS TTNSNEYTPK PKPASKSHQT VQVIRTKAFK CRKVVIPSHL DDHDQMVDRL  180
NVNPGLVPCE CPSSSASQDP QEDSPPCGFL IDFNIDDLFI SDLLKTENFL QDQIDKCDQE  240
MEDGIIKLEG LMGEAMLENS TASVHDHHDD QIFQPKDDHD RVHGLNAISY FLNLEDDHEK  300
WSRNLVGRGS WLEHTAPRGV GTLVDYRAPA CQDAARGEQT QGNTETTDIR SDKEDADVLI  360
LQEAATEAER REARECGDIY ELFGDSEAEE EAEANTRTPR LVRTVLVETS DSELEKQPKP  420
KRATLTRKST RSQTSQSSKA VSALNTSNVV VSVTGRQKRT SSKVTNPQAS RADPIDVPEA  480
SEVFASHPQV SIEGSSTVSH SLVSHDSLSQ QSREVTPPQP PSKAPGLTQG SGEGSGKSPP  540
HIVCKRDLPR PFSVFGITGI SVPKHAQYKS FMSFFENLRA LRDQHQKAKW ASNRVKRFQE  600
KHVKSTAALW QLVEEGSVME ERIAVVDSEI QRLEKQLCSL KAEKVTLTNH LSQKVEHMEK  660
ISQEVVDPKT QFVNNNMYFG ESSQIFTIMQ TYFSKIVALA EDVKLLD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G35550.1	1e-58	MYB family protein