PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PCP005025.1
Organism
Pyrus communis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus
Family MYB_related
Protein Properties Length: 338aa    MW: 36846.4 Da    PI: 6.5743
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PCP005025.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.92e-12556147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
                     +++WT eE+e l  +v+++G+g Wk I +          R+  ++k++w++ 
      PCP005025.1  5 KQKWTVEEEEALRAGVRKHGTGKWKDIQKDPEfnpflSSRSNIDLKDKWRNM 56
                     79***********************************9************95 PP
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    
MGNPKQKWTV EEEEALRAGV RKHGTGKWKD IQKDPEFNPF LSSRSNIDLK DKWRNMTVSS  60
TGPREKSRPK VRTNPDVAVA SVSVPQTSSA APVRRDSPAA AATPARRDSP AAAPVRRDSP  120
VAAPVGRDSP AEAPVRRDAP AATPFKREAS TETPVRRDTT PVADDSSTGL SDAIPAPVCN  180
AMIFEALSAS TDPNGLDANA IASFIEQRNE VPQNFRKSLT GRLRRLVQQD KLEKIQHCYK  240
AKTDPLSVMK APAPMQNDIQ PKQSQSPVYV AVGSDTLEES ARAAAQSIAE AEYKSYLAAE  300
QMKEAERISF MVEDTESMLQ FANEILEQCS EGEVVMMG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17520.16e-44MYB_related family protein