PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP005037.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

bHLH

Protein Properties

Length: 527aa MW: 58947.9 Da PI: 8.2243

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP005037.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37.9	3.3e-12	341	385	5	54
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 h + Er+RR+++N++f++L++llP+ +K +Ka++L A eY+ sL PCP005037.1 341 HMISERKRREKLNESFHTLKSLLPPG-----TKKDKASVLISAREYLTSL 385 8899******************97.....8*************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 527 aa Download sequence
MCSCSLLFFL DGVYDEENQP SSSSGSLARQ LFNEYRLSVF NVVENDCVPG FAFRNGLPYL 60 ELQEMDLQRL ASVDTQRQFY QEARIKTAVF MGCKSGEIEL GLSNVSQINI KRELMRTWLP 120 EAFSRQLSPH TEVASRPINV QQNPPSSSSS SLRSLSAIDS PEYSSLLFNI PTATTSHNIP 180 EIFTQLSSDP LQPININPLE PLPIINLITT TSTSTSPHQQ AIQAFSRTRN IQFPTPEIED 240 AAMTRAILAV LSSSPSSSSY QPPPHTNPPS SSTTYRHLLT PKSTAFKTYS TSALAPRTQM 300 SANLRRQNMH KRSISFLRSL NLMRLREGIQ TTRPTSGQLH HMISERKRRE KLNESFHTLK 360 SLLPPGTKKD KASVLISARE YLTSLKARVA ELSKRNQQLE ARLLPPANLG ANEAAATAGS 420 SNERVSLTLM HVSSESSPDQ DQQIIDLQVV LRSLESCTED MVIRILEFLK RVENVSLMSM 480 EANTWISEPN SNINRVILRL RVDQGTEWDE AAFQEAVRRV VADLALM

Sequence ? help Back to Top

Protein Sequence Length: 527 aa Download sequence

MCSCSLLFFL DGVYDEENQP SSSSGSLARQ LFNEYRLSVF NVVENDCVPG FAFRNGLPYL  60
ELQEMDLQRL ASVDTQRQFY QEARIKTAVF MGCKSGEIEL GLSNVSQINI KRELMRTWLP  120
EAFSRQLSPH TEVASRPINV QQNPPSSSSS SLRSLSAIDS PEYSSLLFNI PTATTSHNIP  180
EIFTQLSSDP LQPININPLE PLPIINLITT TSTSTSPHQQ AIQAFSRTRN IQFPTPEIED  240
AAMTRAILAV LSSSPSSSSY QPPPHTNPPS SSTTYRHLLT PKSTAFKTYS TSALAPRTQM  300
SANLRRQNMH KRSISFLRSL NLMRLREGIQ TTRPTSGQLH HMISERKRRE KLNESFHTLK  360
SLLPPGTKKD KASVLISARE YLTSLKARVA ELSKRNQQLE ARLLPPANLG ANEAAATAGS  420
SNERVSLTLM HVSSESSPDQ DQQIIDLQVV LRSLESCTED MVIRILEFLK RVENVSLMSM  480
EANTWISEPN SNINRVILRL RVDQGTEWDE AAFQEAVRRV VADLALM

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	345	350	ERKRRE
2	346	351	RKRREK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56960.1	8e-63	bHLH family protein