PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP005100.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

SBP

Protein Properties

Length: 1609aa MW: 178203 Da PI: 5.6722

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP005100.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	93.3	2.4e-29	696	761	1	66
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTT CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrL 66 +C+++gC++dls+ak y+rrh vCe hskap v+vsgl++rfC +C rfh+lsefD++k+sCrr+L PCP005100.1 696 ICKADGCAVDLSDAKVYNRRHGVCELHSKAPLVIVSGLKRRFCHKCNRFHDLSEFDDTKKSCRRHL 761 5***************************************************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 1609 aa Download sequence
MKGDGGIYYR NLLRIVNEDK GSPPTSKSEL CCKSKYPLKY RYSNLNFLLV VVLLAHQLEE 60 EQTEDLVVER EYNRKSKLGI ESTKDISIIS APREQGVSDS NGHMAHQEVE GLRGGWAQEE 120 HPYPHYDPPP TASGFEQNCS YIMAVALVGG AAIGALFGVL YDVVKESMGR TVMQYKPLLE 180 DLKFTLDCLR PRIIQEIGDH NVALGLPNDD IERLQQQMEE GIKLVGRLSK LSMWNCYVLC 240 SCCKCSEPSY TDRLIQLDRS LRALLEVLRL QEARDLKENL LLNRKIYEKQ DELATRQSEI 300 LKIAGEILRA QQEDKGVQEL SGSNAQTVVQ EQIGGSGVQQ AASINRGGAA LGAVFEVLFS 360 AVQQTKEKTR MFKRILGHLE STLDSIKPWI EEIAEYNKVL HLTEEELESF RVEMEKGVEL 420 VRKCSKVSFW ASNKKDATES LVSVTNIETV TMKIEESGII QYDPLAELPS GDRGESSGSG 480 AETTPHEQNG ENGGQQMAPS GGGVGPTALG AALERDVRES LVSVSNIEAV INQIEGSGVV 540 KLQNEQNEAK RSCEVPAAMA KSAVGLNALN VEGTRDLTET LDPEANIKVG WQNVEESWVA 600 QSKTEHPSCT VGLDAMNMQV GARSMEKTSV SDVEAGLKRI RGKEVSEPDA PFRELKEDVL 660 KDEEDEELDE QVEDLHDRKK KGAESLTGAS GDRMAICKAD GCAVDLSDAK VYNRRHGVCE 720 LHSKAPLVIV SGLKRRFCHK CNRFHDLSEF DDTKKSCRRH LPYIERDGTG TQVKDVSGDI 780 DTVISRIEWS GVVQSQNDQS EIKDSYAVVE TTSPAVGLNV LSVKGTRDAK ETLQTSSSNT 840 EAGLEQIQGK EVLDFEPPYA EYKETEYIPS SVTVGLDVLL RRLKRFLLND EVSAVVLTGP 900 QGSGKTTLAK YFCEDEEVKN IFKKNIFFVL DSSASTLGDK SSCIPKDAGT MFPLDNPVKS 960 TTLKYMQKLL FKVNIYSKKE KKKAMKAVSG VEDLLGRSAL DVYIDSRNQS GTADGWKLTG 1020 AREALSINLA TFEKPLQKLT FADLLKATNG FHDNSLIGKE METFGKIKHR NLVPLLGYCK 1080 VGDEWLLVSE YMKYGSLDDV LHKPKKAGIK LNWAARRKIA IGSARGLAFL HHNCIPHLIH 1140 RDMKSSNVLV DENLEARVSD FGMARLICGM DTHLSVSTLA GTPGYVPPEY YQSFRCSTKE 1200 YYQSFRCSTK GDVYSYGVVL LELLTGRRPT NSAGFGDNNL VGWVKQHAEL KISDVFDPEL 1260 MKEDASLEIE LLQHLKVAYA CLDDRPWRRP TMLQVMAMFK EIQAGSGKNS QSTIAADDDG 1320 VEMGEMSIKE APESKHHTCI RVGAVSFGVS TDSGVPNTTT FSLLSARSGN VAWEHIVNQT 1380 IHDSIVYYTT PQAIWKDLED RFSQVYSMIV QQEKQHDVSD SREVVEILSI MNNNETAHNA 1440 PKANVAANAT EKSSDLLPLT IGMEDSHSLW QSLERHFSGA SRTYVHSLQS KIQMIQKGDS 1500 SMTDFLNSIK DISDKLAAAG KPQSKSDLVV YILSGLHDEY ESFVDSIKTR NESVTTDELH 1560 GLLLSKEILL RKHKTKASSS STAPFHVYAA QSANSGGISN RGNWNNNNF

Sequence ? help Back to Top

Protein Sequence Length: 1609 aa Download sequence

MKGDGGIYYR NLLRIVNEDK GSPPTSKSEL CCKSKYPLKY RYSNLNFLLV VVLLAHQLEE  60
EQTEDLVVER EYNRKSKLGI ESTKDISIIS APREQGVSDS NGHMAHQEVE GLRGGWAQEE  120
HPYPHYDPPP TASGFEQNCS YIMAVALVGG AAIGALFGVL YDVVKESMGR TVMQYKPLLE  180
DLKFTLDCLR PRIIQEIGDH NVALGLPNDD IERLQQQMEE GIKLVGRLSK LSMWNCYVLC  240
SCCKCSEPSY TDRLIQLDRS LRALLEVLRL QEARDLKENL LLNRKIYEKQ DELATRQSEI  300
LKIAGEILRA QQEDKGVQEL SGSNAQTVVQ EQIGGSGVQQ AASINRGGAA LGAVFEVLFS  360
AVQQTKEKTR MFKRILGHLE STLDSIKPWI EEIAEYNKVL HLTEEELESF RVEMEKGVEL  420
VRKCSKVSFW ASNKKDATES LVSVTNIETV TMKIEESGII QYDPLAELPS GDRGESSGSG  480
AETTPHEQNG ENGGQQMAPS GGGVGPTALG AALERDVRES LVSVSNIEAV INQIEGSGVV  540
KLQNEQNEAK RSCEVPAAMA KSAVGLNALN VEGTRDLTET LDPEANIKVG WQNVEESWVA  600
QSKTEHPSCT VGLDAMNMQV GARSMEKTSV SDVEAGLKRI RGKEVSEPDA PFRELKEDVL  660
KDEEDEELDE QVEDLHDRKK KGAESLTGAS GDRMAICKAD GCAVDLSDAK VYNRRHGVCE  720
LHSKAPLVIV SGLKRRFCHK CNRFHDLSEF DDTKKSCRRH LPYIERDGTG TQVKDVSGDI  780
DTVISRIEWS GVVQSQNDQS EIKDSYAVVE TTSPAVGLNV LSVKGTRDAK ETLQTSSSNT  840
EAGLEQIQGK EVLDFEPPYA EYKETEYIPS SVTVGLDVLL RRLKRFLLND EVSAVVLTGP  900
QGSGKTTLAK YFCEDEEVKN IFKKNIFFVL DSSASTLGDK SSCIPKDAGT MFPLDNPVKS  960
TTLKYMQKLL FKVNIYSKKE KKKAMKAVSG VEDLLGRSAL DVYIDSRNQS GTADGWKLTG  1020
AREALSINLA TFEKPLQKLT FADLLKATNG FHDNSLIGKE METFGKIKHR NLVPLLGYCK  1080
VGDEWLLVSE YMKYGSLDDV LHKPKKAGIK LNWAARRKIA IGSARGLAFL HHNCIPHLIH  1140
RDMKSSNVLV DENLEARVSD FGMARLICGM DTHLSVSTLA GTPGYVPPEY YQSFRCSTKE  1200
YYQSFRCSTK GDVYSYGVVL LELLTGRRPT NSAGFGDNNL VGWVKQHAEL KISDVFDPEL  1260
MKEDASLEIE LLQHLKVAYA CLDDRPWRRP TMLQVMAMFK EIQAGSGKNS QSTIAADDDG  1320
VEMGEMSIKE APESKHHTCI RVGAVSFGVS TDSGVPNTTT FSLLSARSGN VAWEHIVNQT  1380
IHDSIVYYTT PQAIWKDLED RFSQVYSMIV QQEKQHDVSD SREVVEILSI MNNNETAHNA  1440
PKANVAANAT EKSSDLLPLT IGMEDSHSLW QSLERHFSGA SRTYVHSLQS KIQMIQKGDS  1500
SMTDFLNSIK DISDKLAAAG KPQSKSDLVV YILSGLHDEY ESFVDSIKTR NESVTTDELH  1560
GLLLSKEILL RKHKTKASSS STAPFHVYAA QSANSGGISN RGNWNNNNF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G15270.1	1e-25	SBP family protein