PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP005259.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

MYB

Protein Properties

Length: 575aa MW: 62467.7 Da PI: 9.6141

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP005259.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	33.6	9.1e-11	12	54	4	44
S-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 WT e d+ + +a + ++ + +W++Ia+ ++ g+tl+++++++ PCP005259.1 12 WTREQDKAFENALAIYPEDssdRWEKIAADVQ-GKTLEEIRHHY 54 ******************************.********9 PP
2	Myb_DNA-binding	26.3	1.7e-08	170	207	10	47
HHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 10 ellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 l++ + +++G+g+W++I+r + +Rt+ q+ s+ qky PCP005259.1 170 RLFLLGLEKYGKGDWRSISRNFVVTRTPTQVASHAQKY 207 689999*******************************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 575 aa Download sequence
MTVEEAGCSS LWTREQDKAF ENALAIYPED SSDRWEKIAA DVQGKTLEEI RHHYDLLLED 60 ISQIEAGVVP LPCYNSSSEG STSHASDEGT NKKGGHSGNY SNESNHGSKA SRADQERRKG 120 IAWTEDEHSF WHTALLHWAK KPLVLNLALA DLNSNCYHEN WFVYGRIELR LFLLGLEKYG 180 KGDWRSISRN FVVTRTPTQV ASHAQKYFIR LNSMNKDRRR SSIHDITSVN NGEISAAQGP 240 ITGQANGAAV GSSGKSTKQS PAGAPGVGMY GSAPSIGQPI GGPLVSAVGT PVNLPAPPHM 300 AYGVSAPVPG VVPGAPMNMV PMTYPMPHSS HSYSSSSNMK ASLQGQVIGI PINSAAAYAL 360 KSADHGAAIQ YHHNIPAPAP SDATEPSKLI RQSRLYSVLN RMNKLTNKAD SFAHGVKEHV 420 RLGPKITETV KGKLRLGAKI VKAGGTLEVF KHAFSVKAGE KLLKASQCYL STTAGPMAGL 480 LFISTDKIAF CSERSIKLPS SDSDGQQLVS RVHYKVVIPV KKIKAVNQSE NTKKPSQKYV 540 EIVTADDFDF WFMGFLNYQK TLKYLQQAIN IPSQA

Sequence ? help Back to Top

Protein Sequence Length: 575 aa Download sequence

MTVEEAGCSS LWTREQDKAF ENALAIYPED SSDRWEKIAA DVQGKTLEEI RHHYDLLLED  60
ISQIEAGVVP LPCYNSSSEG STSHASDEGT NKKGGHSGNY SNESNHGSKA SRADQERRKG  120
IAWTEDEHSF WHTALLHWAK KPLVLNLALA DLNSNCYHEN WFVYGRIELR LFLLGLEKYG  180
KGDWRSISRN FVVTRTPTQV ASHAQKYFIR LNSMNKDRRR SSIHDITSVN NGEISAAQGP  240
ITGQANGAAV GSSGKSTKQS PAGAPGVGMY GSAPSIGQPI GGPLVSAVGT PVNLPAPPHM  300
AYGVSAPVPG VVPGAPMNMV PMTYPMPHSS HSYSSSSNMK ASLQGQVIGI PINSAAAYAL  360
KSADHGAAIQ YHHNIPAPAP SDATEPSKLI RQSRLYSVLN RMNKLTNKAD SFAHGVKEHV  420
RLGPKITETV KGKLRLGAKI VKAGGTLEVF KHAFSVKAGE KLLKASQCYL STTAGPMAGL  480
LFISTDKIAF CSERSIKLPS SDSDGQQLVS RVHYKVVIPV KKIKAVNQSE NTKKPSQKYV  540
EIVTADDFDF WFMGFLNYQK TLKYLQQAIN IPSQA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08520.1	1e-104	MYB family protein