PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP005445.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

C3H

Protein Properties

Length: 644aa MW: 72651.9 Da PI: 6.8788

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP005445.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	39.4	1e-12	556	581	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +ktelC+ +++ G+C+yGd C+FaHg PCP005445.1 556 FKTELCNKWQEVGECPYGDHCQFAHG 581 79***********************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 644 aa Download sequence
MKKSCDLCLD LRPVVYCEAD AARLCLSCDA KVHSANPIVD SHQRTLLCDS CKYRSADDQC 60 LDHRMFMCRV CDQSLHQHSS RPHQKRTMIS SYTGCPSAKE FAAFWGFKLN ENLSTSTGRN 120 AISSHGDGGK YQKSSCNGFI LDQILDLKRL QLSEENNPNS LLVSAHDQQS HDKRSLVHHH 180 NGTTSSRKFE SNEELPFYTE SFWHCRSPVQ NSQLWSQNMQ DLGVCEEQTY DHADLNTPDV 240 DSIFRNFEES FGADQYVPYE GHARAKEIAS EIQNTAPLLN FRVKLKKLNR NFEKRCSETT 300 TVEMQNDTSS TAYGGHATSA MPKSPLKSQS SADDAVFASL YSAIFDSKPS VSRYDVEESD 360 HDSSSAHRHR QLYHSILVQD HQEMVNRHSR CLKHLQETSE EADALRRENV HLRSLNLELN 420 KHLSLLIHAS VQKKFGSPSS VRTTTPFGIV SGLGDMRTYD KRAEQDVSDE SPTSVIESEG 480 GDAENIDAER FSLPKSISVR SNGYVKSAQA AQAGASTATR TGTATTFNAS QKVFVPIGVK 540 EEEPPVELEV YNQGMFKTEL CNKWQEVGEC PYGDHCQFAH GIEELRPVIR HPRYKTDVCR 600 MVLSGVVCPY GHRCHFRHAL TENEKLMVPN KPSQRQFNLD RQNK

Sequence ? help Back to Top

Protein Sequence Length: 644 aa Download sequence

MKKSCDLCLD LRPVVYCEAD AARLCLSCDA KVHSANPIVD SHQRTLLCDS CKYRSADDQC  60
LDHRMFMCRV CDQSLHQHSS RPHQKRTMIS SYTGCPSAKE FAAFWGFKLN ENLSTSTGRN  120
AISSHGDGGK YQKSSCNGFI LDQILDLKRL QLSEENNPNS LLVSAHDQQS HDKRSLVHHH  180
NGTTSSRKFE SNEELPFYTE SFWHCRSPVQ NSQLWSQNMQ DLGVCEEQTY DHADLNTPDV  240
DSIFRNFEES FGADQYVPYE GHARAKEIAS EIQNTAPLLN FRVKLKKLNR NFEKRCSETT  300
TVEMQNDTSS TAYGGHATSA MPKSPLKSQS SADDAVFASL YSAIFDSKPS VSRYDVEESD  360
HDSSSAHRHR QLYHSILVQD HQEMVNRHSR CLKHLQETSE EADALRRENV HLRSLNLELN  420
KHLSLLIHAS VQKKFGSPSS VRTTTPFGIV SGLGDMRTYD KRAEQDVSDE SPTSVIESEG  480
GDAENIDAER FSLPKSISVR SNGYVKSAQA AQAGASTATR TGTATTFNAS QKVFVPIGVK  540
EEEPPVELEV YNQGMFKTEL CNKWQEVGEC PYGDHCQFAH GIEELRPVIR HPRYKTDVCR  600
MVLSGVVCPY GHRCHFRHAL TENEKLMVPN KPSQRQFNLD RQNK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68200.1	2e-70	C3H family protein