PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PCP005708.1

Organism

Pyrus communis

Taxonomic ID

23211

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Maleae; Pyrus

Family

SBP

Protein Properties

Length: 425aa MW: 47283.2 Da PI: 7.7311

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PCP005708.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	124.2	5.6e-39	178	255	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +CqvegC++ l +akeyhrrhkvC +hska+ v+v g+ qrfCqqCsrfh +sefDe+krsCrrrLa+hnerrrk+++ PCP005708.1 178 RCQVEGCHVALLNAKEYHRRHKVCAMHSKASRVTVLGQDQRFCQQCSRFHVVSEFDESKRSCRRRLAGHNERRRKSSH 255 6**************************************************************************976 PP

Sequence ? help Back to Top
Protein Sequence Length: 425 aa Download sequence
MEIGGNMDML SHDVNNFSSR EQDGSNNSQL PNSWVIWDTT TTSHTTAAPT NNNNHVLYST 60 AATAVTVAAI GEEASSSTTT GGHALFTGHP LHHQFSNMYS CWADHGGGPH FHQDPHLMCL 120 KLGKRHYFED HGNHALPLDE RHVAGFPVGM MSKKGKAAAA AAQLYGAGQP LALKVVPRCQ 180 VEGCHVALLN AKEYHRRHKV CAMHSKASRV TVLGQDQRFC QQCSRFHVVS EFDESKRSCR 240 RRLAGHNERR RKSSHDPLAR SSSQDNKLMT GRFQYLSSTT GRALSLLSSK TTLDSWVSPS 300 DLSSRSSTAL RELIAENRAA NLARQLVSSD RNWDSSSHNN NVTEDLFCDH GQSWSNSVEP 360 HQHQMFPENQ HGWDRFHESS GAHLTLDLRR PPSQAYGFMS ERAKTKAEED QECDLWNSFQ 420 GTSVV

Sequence ? help Back to Top

Protein Sequence Length: 425 aa Download sequence

MEIGGNMDML SHDVNNFSSR EQDGSNNSQL PNSWVIWDTT TTSHTTAAPT NNNNHVLYST  60
AATAVTVAAI GEEASSSTTT GGHALFTGHP LHHQFSNMYS CWADHGGGPH FHQDPHLMCL  120
KLGKRHYFED HGNHALPLDE RHVAGFPVGM MSKKGKAAAA AAQLYGAGQP LALKVVPRCQ  180
VEGCHVALLN AKEYHRRHKV CAMHSKASRV TVLGQDQRFC QQCSRFHVVS EFDESKRSCR  240
RRLAGHNERR RKSSHDPLAR SSSQDNKLMT GRFQYLSSTT GRALSLLSSK TTLDSWVSPS  300
DLSSRSSTAL RELIAENRAA NLARQLVSSD RNWDSSSHNN NVTEDLFCDH GQSWSNSVEP  360
HQHQMFPENQ HGWDRFHESS GAHLTLDLRR PPSQAYGFMS ERAKTKAEED QECDLWNSFQ  420
GTSVV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42200.1	2e-33	SBP family protein